PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen07g034430.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 428aa    MW: 48549.9 Da    PI: 8.1903
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen07g034430.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.52e-133504282374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn..sseelaalkl....fsev 87 
                       ++lL++cAe +s +d+++a++lL+ ls+++sp gd+++Rl++ ft+AL+ rl+r  +s++ + ++p et++++  ss++la  +     +++v
  Sopen07g034430.1  50 RQLLISCAELISRSDFSAAKRLLTILSTNSSPFGDSTERLVHQFTRALSLRLNRyISSTTNHFMTPVETTPTDssSSSSLALIQSsylsLNQV 142
                       89****************************************************55555666668888887775533333333335668**** PP

              GRAS  88 sPilkfshltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                       +P+++f++ltaNqaIlea++g+ +++Hi+Dfdi++G+QWp+L+qaLa+R  ++p+lRiTg g+    + ++l++tg+rLakfA++lg++f+f+
  Sopen07g034430.1 143 TPFIRFTQLTANQAILEAINGNhQAIHIVDFDINHGVQWPPLMQALADR-YPAPTLRITGTGN----DLDTLRRTGDRLAKFAHSLGLRFQFH 230
                       *********************9899***********************9.899**********....************************** PP

              GRAS 180 vl.vakrledl.....eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                       +l va++ +d       ++++ + p+E+la+n+v+ lhrll+++ +l+     +L+ vks++Pk+v+++e+ea+hn++ Fl+rf+eal+yy+a
  Sopen07g034430.1 231 PLyVANNNHDHdedpsIISSIVLLPDETLAINCVFYLHRLLKDREKLRI----FLHRVKSMNPKIVTIAEKEANHNHPLFLQRFIEALDYYTA 319
                       **74443333323222356667778****************99999999....**************************************** PP

              GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgsl 358
                       +fdslea+lp+ s+er++vE++++greiv++va+eg++r+erhe++++W+ +l+++GF++v+ls +a +qaklllr ++ s+gy++  +s+s+
  Sopen07g034430.1 320 VFDSLEATLPPGSRERMTVEQVWFGREIVDIVAMEGDKRKERHERFRSWEVMLRSCGFSNVALSPFALSQAKLLLRLHYpSEGYQLGVSSNSF 412
                       ********************************************************************************************* PP

              GRAS 359 vlgWkdrpLvsvSaWr 374
                       +lgW+++pL+s+S+Wr
  Sopen07g034430.1 413 FLGWQNQPLFSISSWR 428
                       ***************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.37623407IPR005202Transcription factor GRAS
PfamPF035146.9E-13150428IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010223Biological Processsecondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MLGSFGSSSS QSHPHHDEES SDHHQRRRFT ATATTITTTT TTTSPAIQIR QLLISCAELI  60
SRSDFSAAKR LLTILSTNSS PFGDSTERLV HQFTRALSLR LNRYISSTTN HFMTPVETTP  120
TDSSSSSSLA LIQSSYLSLN QVTPFIRFTQ LTANQAILEA INGNHQAIHI VDFDINHGVQ  180
WPPLMQALAD RYPAPTLRIT GTGNDLDTLR RTGDRLAKFA HSLGLRFQFH PLYVANNNHD  240
HDEDPSIISS IVLLPDETLA INCVFYLHRL LKDREKLRIF LHRVKSMNPK IVTIAEKEAN  300
HNHPLFLQRF IEALDYYTAV FDSLEATLPP GSRERMTVEQ VWFGREIVDI VAMEGDKRKE  360
RHERFRSWEV MLRSCGFSNV ALSPFALSQA KLLLRLHYPS EGYQLGVSSN SFFLGWQNQP  420
LFSISSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-615642726378Protein SCARECROW
5b3h_A1e-615642725377Protein SCARECROW
5b3h_D1e-615642725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269|PubMed:12730136}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ8097430.0FJ809743.1 Solanum pennellii chromosome 7 clone C07SpCP018I014.P4G10, complete sequence.
GenBankHG9754460.0HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081866.10.0scarecrow-like protein 18
SwissprotQ9ZWC51e-131SCL18_ARATH; Scarecrow-like protein 18
TrEMBLQ9ZSP20.0Q9ZSP2_SOLLC; Lateral suppressor
STRINGSolyc07g066250.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112982225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55580.11e-127GRAS family protein
Publications ? help Back to Top
  1. Zhang B, et al.
    Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat.
    Sci Rep, 2015. 5: p. 12211
    [PMID:26197925]