PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g035250.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 282aa    MW: 32932 Da    PI: 5.3596
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g035250.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM153.59.7e-48101401129
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                       lppGf+F P+deel+++yL +k++++k  + ++ + e+d++++ePw+Lp+ +k +++ewyfFs rd+ky+tg  +nrat sgyWkatgkd+ v
  Sopen06g035250.1  10 LPPGFKFCPSDEELICHYLYNKTANEKGLVLNFsLVEIDLHTCEPWQLPEVAKLNSSEWYFFSFRDRKYSTGFWANRATISGYWKATGKDRIV 102
                       79********************999994444555***************87788899************************************ PP

               NAM  93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                       l+  +++++g++ktLvfyk+rap+g ktdW+mhe+rle
  Sopen06g035250.1 103 LDPqTSNAIGMRKTLVFYKNRAPNGIKTDWIMHEFRLE 140
                       *9867788***************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.58E-578159IPR003441NAC domain
PROSITE profilePS5100554.50710158IPR003441NAC domain
PfamPF023651.2E-2511139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDLREIGATL PPGFKFCPSD EELICHYLYN KTANEKGLVL NFSLVEIDLH TCEPWQLPEV  60
AKLNSSEWYF FSFRDRKYST GFWANRATIS GYWKATGKDR IVLDPQTSNA IGMRKTLVFY  120
KNRAPNGIKT DWIMHEFRLE NPHIPLKEDW VLCRVFYKNK GENNNNCTNK LSSQNKCEAI  180
VTSSNVSQSP IYMNQHSLNC DIKYQNSPHQ IIQNSNIIHH HLFDLLVKDH LETTRLTECS  240
QEDDQYGLLF DMDFEESYVQ DEQIHSSLED MRFDDENSAI LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-43915916166NO APICAL MERISTEM PROTEIN
1ut4_B1e-43915916166NO APICAL MERISTEM PROTEIN
1ut7_A1e-43915916166NO APICAL MERISTEM PROTEIN
1ut7_B1e-43915916166NO APICAL MERISTEM PROTEIN
3swm_A1e-43915919169NAC domain-containing protein 19
3swm_B1e-43915919169NAC domain-containing protein 19
3swm_C1e-43915919169NAC domain-containing protein 19
3swm_D1e-43915919169NAC domain-containing protein 19
3swp_A1e-43915919169NAC domain-containing protein 19
3swp_B1e-43915919169NAC domain-containing protein 19
3swp_C1e-43915919169NAC domain-containing protein 19
3swp_D1e-43915919169NAC domain-containing protein 19
4dul_A1e-43915916166NAC domain-containing protein 19
4dul_B1e-43915916166NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078792.10.0protein CUP-SHAPED COTYLEDON 3-like
TrEMBLA0A3Q7H1Y90.0A0A3Q7H1Y9_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000519150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18822466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.14e-82NAC domain containing protein 74