PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g031890.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 459aa    MW: 51030.5 Da    PI: 8.1955
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g031890.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.36.9e-17151200155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopen06g031890.2 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 200
                       78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-16151209IPR016177DNA-binding domain
PfamPF008476.8E-9151200IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-17152209IPR001471AP2/ERF domain
PROSITE profilePS5103217.662152208IPR001471AP2/ERF domain
CDDcd000181.03E-23152207No hitNo description
SMARTSM003803.5E-32152214IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-6243287IPR016177DNA-binding domain
CDDcd000181.83E-11243288No hitNo description
SMARTSM003801.3E-10244292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MLDLNVSVIY NNDLPQVSLL DESAMSNSSL RNAEATTSAR DEDSCAGELF AFNFGILKVE  60
GAETSRSSNN DDEEGYGQNQ RVTHSQFVTR QLFPVDDGEL NRKQTDRVIL SSARSGTSIG  120
FGDVRIIQQQ QPEQPKQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHTAARA YDRAAIKFRG VDADINFSLS DYEEDMQQMK NLGKEEFVHL LRRHSTGFSR  240
GSSKFRGVTL HKCGRWEARM GQFLGKKAYD KAAIKTSGRE AVTNFEPSSY EGETMSLPQS  300
EGNQHDLDLN LGISTTSSKE NDRLEGSRYH PYDMQDATKP KMDKPGSVIV GSSHLKGLPM  360
SSQQAQLWTG IYSNFSSSYE GRAYDKRKDT GSSQGPPNWA LQMPSQVDTN SPLTMFCTAA  420
SSGFFIPSTT SITSSTSALA TSTNASQCFY QINPRLPLP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869540.0HQ586954.1 Solanum lycopersicum AP2 transcription factor SlAP2e mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079867.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK031e-101RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLF6KQN50.0F6KQN5_SOLLC; AP2 transcription factor SlAP2e
STRINGSolyc06g075510.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-96related to AP2.7