PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g031890.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 474aa    MW: 52758.4 Da    PI: 7.5858
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g031890.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.27.2e-17151200155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopen06g031890.1 151 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 200
                       78*******************......55************************997 PP

2AP239.31.6e-12243291153
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                       s+++GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k 
  Sopen06g031890.1 243 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKT 291
                       79********.7******5553..2.26**********99**********886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.1E-9151200IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-16151209IPR016177DNA-binding domain
SMARTSM003803.5E-32152214IPR001471AP2/ERF domain
PROSITE profilePS5103217.662152208IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-17152209IPR001471AP2/ERF domain
CDDcd000181.41E-23152207No hitNo description
PfamPF008471.2E-7243290IPR001471AP2/ERF domain
CDDcd000186.44E-24243303No hitNo description
SuperFamilySSF541713.73E-16243302IPR016177DNA-binding domain
SMARTSM003806.2E-30244307IPR001471AP2/ERF domain
PROSITE profilePS5103215.132244301IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-15244301IPR001471AP2/ERF domain
PRINTSPR003672.6E-5245256IPR001471AP2/ERF domain
PRINTSPR003672.6E-5283303IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MLDLNVSVIY NNDLPQVSLL DESAMSNSSL RNAEATTSAR DEDSCAGELF AFNFGILKVE  60
GAETSRSSNN DDEEGYGQNQ RVTHSQFVTR QLFPVDDGEL NRKQTDRVIL SSARSGTSIG  120
FGDVRIIQQQ QPEQPKQQVK KSRRGPRSRS SQYRGVTFYR RTGRWESHIW DCGKQVYLGG  180
FDTAHTAARA YDRAAIKFRG VDADINFSLS DYEEDMQQMK NLGKEEFVHL LRRHSTGFSR  240
GSSKFRGVTL HKCGRWEARM GQFLGKKYIY LGLFDSEVEA ARAYDKAAIK TSGREAVTNF  300
EPSSYEGETM SLPQSEGNQH DLDLNLGIST TSSKENDRLE GSRYHPYDMQ DATKPKMDKP  360
GSVIVGSSHL KGLPMSSQQA QLWTGIYSNF SSSYEGRAYD KRKDTGSSQG PPNWALQMPS  420
QVDTNSPLTM FCTAASSGFF IPSTTSITSS TSALATSTNA SQCFYQINPR LPLP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5869540.0HQ586954.1 Solanum lycopersicum AP2 transcription factor SlAP2e mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079866.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotQ84TB51e-103AP22_ORYSJ; APETALA2-like protein 2
TrEMBLF6KQN50.0F6KQN5_SOLLC; AP2 transcription factor SlAP2e
STRINGSolyc06g075510.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-108related to AP2.7
Publications ? help Back to Top
  1. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  2. Wang L, et al.
    Coordinated regulation of vegetative and reproductive branching in rice.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9
    [PMID:26631749]
  3. Dai Z,Wang J,Zhu M,Miao X,Shi Z
    OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice.
    Front Plant Sci, 2016. 7: p. 1891
    [PMID:28066457]