PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g026750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 281aa    MW: 31081.3 Da    PI: 9.6438
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g026750.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP95.97.8e-3061135374
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...e 74 
                       g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WL+ + k +i++l+ ++ +++s +   +
  Sopen06g026750.1  61 GGKDRHSKVCTVKGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLIDATKDEIDKLPPLQIPPPSLShffN 135
                       79*************************************************************777763222221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.4462120IPR017887Transcription factor TCP subgroup
PfamPF036341.3E-2662125IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MNSRKQETGA GGDTNNSKTS SRTTTTTATA TAPSSSSSRQ SSSWGGGFKN PRIVRVSRSF  60
GGKDRHSKVC TVKGLRDRRI RLSVPTAIQL YDLQDRLGLS QPSKVVDWLI DATKDEIDKL  120
PPLQIPPPSL SHFFNTKDHH NLDFVDTGLF GKDKWIATTN DQESSSHLIF QSSNLGMLNT  180
FSNNWEPNSN LSLGPFGNYQ DQYQQQQNMP LIPSSSHHQQ QLYFCPTSSS TTTLSSLVPP  240
YNSHFHPNSI APTLQLTTSP VKSSFSLQDH HQHNHKEGSG S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1967121155Putative transcription factor PCF6
5zkt_B1e-1967121155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00008PBMTransfer from 496250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078020.10.0transcription factor TCP13-like
SwissprotQ9FME34e-47TCP5_ARATH; Transcription factor TCP5
TrEMBLG3BGU61e-161G3BGU6_SOLLC; TCP transcription factor 6
STRINGSolyc06g069460.1.11e-162(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.19e-43TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]