PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g026500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 362aa    MW: 40708.2 Da    PI: 7.8793
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g026500.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.13.1e-381142763134
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........................sss 68 
                        kkdrhski T++g+RdRR+Rls++ a++fF Lqd LGfdk+skt+eWLl+q+  ai el+                             s+s
  Sopen06g026500.1 114 SKKDRHSKINTARGPRDRRMRLSLDAARKFFRLQDLLGFDKASKTVEWLLTQSDSAIEELVAAkgndaqvaqqtscntpttttgigaicaSNS 206
                       69*************************************************************99*****99999999999999988877444 PP

               TCP  69 sasec...eaesssssasnsssg.kaaksaakskksqksaasalnlakesrakarararertrekmrikn 134
                        +++c   +  ++ ss+++++++ + +k++ k+  + ++ a    l kesr++arararert++k++ ++
  Sopen06g026500.1 207 ISESCeviSGTDETSSNDKNKETaQDEKKKRKKVVNAARRAVLEPLTKESRNQARARARERTKSKKMSQT 276
                       445677774444444444444442555555588888888999999***************9999887765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.6E-44114274IPR005333Transcription factor, TCP
PROSITE profilePS5136934.063115173IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.49254271IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MYPPSNNNCN YSPILSSLIC QNIPSSPCMQ YEHELYFQSF NHDDQYYFQQ QQLVPLIDDL  60
SPHILADSCI ETITKPSNCN HVLEGMEEGR GEKKGDDDVR SSRISISKNN KRSSKKDRHS  120
KINTARGPRD RRMRLSLDAA RKFFRLQDLL GFDKASKTVE WLLTQSDSAI EELVAAKGND  180
AQVAQQTSCN TPTTTTGIGA ICASNSISES CEVISGTDET SSNDKNKETA QDEKKKRKKV  240
VNAARRAVLE PLTKESRNQA RARARERTKS KKMSQTGKSK APANDLNPSG SRRPANKTCE  300
EAGTHEELNF HQEKNSVDDC NFMVNGNWNP FTIFSYHEQY AGISNEHQLV TDLQFCGKLW  360
EG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234238KKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015078058.10.0transcription factor CYCLOIDEA-like
TrEMBLF6KB990.0F6KB99_SOLLC; BRANCHED1B
STRINGSolyc06g069240.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.21e-19TCP family protein