PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g025830.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 289aa    MW: 33510.2 Da    PI: 6.6746
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g025830.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.68.6e-151776155
               AP2  1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55
                      s y+GV++++++gr++A+++d  ++n    k+ ++++lg +  +e Aa a++ a++k++g
  Sopen06g025830.1 17 SIYRGVTRHRWTGRYEAHLWDkNCWNEsqtKKgRQVYLGAYNEEEAAAHAHDLAALKYWG 76
                      57*******************999977778557*************************98 PP

2AP250.26.2e-16119170155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++ +grW+A+I   +   g +k+ +lg++ ++eeAa a++ a+ +++g
  Sopen06g025830.1 119 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYASEEEAAIAYDMAAIQYRG 170
                       79****99**********99966...3.6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.36E-161786IPR016177DNA-binding domain
PfamPF008479.5E-121776IPR001471AP2/ERF domain
SMARTSM003801.7E-241890IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-151884IPR001471AP2/ERF domain
PROSITE profilePS5103218.8211884IPR001471AP2/ERF domain
PRINTSPR003671.1E-61930IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-18119180IPR016177DNA-binding domain
CDDcd000185.47E-24119180No hitNo description
PfamPF008471.5E-11119170IPR001471AP2/ERF domain
SMARTSM003802.7E-26120184IPR001471AP2/ERF domain
PROSITE profilePS5103218.162120178IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-17120178IPR001471AP2/ERF domain
PRINTSPR003671.1E-6160180IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MKRKRKPRDS PPQRRSSIYR GVTRHRWTGR YEAHLWDKNC WNESQTKKGR QVYLGAYNEE  60
EAAAHAHDLA ALKYWGQHTI LNFSVSTYEK EIKEMETQSR EEYIGSLRRK SSGFSRGVSR  120
YRGVARHHHN GRWEARIGRV FGNKYLYLGT YASEEEAAIA YDMAAIQYRG PNAVTNFDIS  180
RYNSLGPNPN DMNIPMPNTN KEEKISSSVV DCPETPPEVE KCRRSSTFPD DIQTYFDCQD  240
SSSSFVEDSH IIFGDLESFM LPMMFESCHQ LEEFLSFSPC SEFELETSD
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077937.10.0AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-110AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A1U8H9641e-144A0A1U8H964_CAPAN; AP2-like ethylene-responsive transcription factor At1g16060
STRINGSolyc06g068570.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.11e-108ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]