PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g023690.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 322aa    MW: 34474 Da    PI: 7.9123
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g023690.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.61.2e-3933161589
               TCP   5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........ 88 
                       k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++  ++s +ss+ + s++        
  Sopen06g023690.1  33 KKPSKDRHTKVDGRGRRIRMPALCAARVFQLTKELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNVSLRSSGTTISAPpsksaplf 125
                       899***************************************************************999877777777774444455556677 PP

               TCP  89 ...................................k 89 
                                                          +
  Sopen06g023690.1 126 ihggattmlgfhhqipgnsfgqdpdenfmkkryreD 161
                       777777766666666666665433333332222220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.2E-3836178IPR005333Transcription factor, TCP
PROSITE profilePS5136927.6523690IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEFRESNSKN NQDGGSNSNN NSNENNNNVK IVKKPSKDRH TKVDGRGRRI RMPALCAARV  60
FQLTKELGHK SDGETIEWLL QQAEPSIIAA TGTGTIPANF STLNVSLRSS GTTISAPPSK  120
SAPLFIHGGA TTMLGFHHQI PGNSFGQDPD ENFMKKRYRE DTTAASTSPS SSSAKPERTG  180
VQGHEPDQES KPGSSNPSSY IPTPAMWAVG PAAGNVGNTF WMLPGTSSTM QRIGGFELPG  240
GGRFSPVQLG SMFLQQPQPV QQLGLGVTET NMGMLASMNA YNSSSSRGSG IDLGMNLEQH  300
HHHQNQPQGS DSGDENHKDS QS
Functional Description ? help Back to Top
Source Description
UniProtCan specifically bind site II elements in the promoter region of PP438/PNM1. {ECO:0000269|PubMed:21297037}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015077434.10.0transcription factor TCP8-like
SwissprotQ9C5181e-66TCP8_ARATH; Transcription factor TCP8
TrEMBLG3BGV30.0G3BGV3_SOLLC; TCP transcription factor 13
STRINGSolyc06g065190.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35560.16e-59TCP family protein
Publications ? help Back to Top
  1. Mazur MJ, et al.
    Arabidopsis TCP Transcription Factors Interact with the SUMO Conjugating Machinery in Nuclear Foci.
    Front Plant Sci, 2017. 8: p. 2043
    [PMID:29250092]