PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g022520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 372aa    MW: 41383.6 Da    PI: 4.6445
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g022520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.33.7e-18102151255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +++G+r+++ +g+W+AeIrdp++     r++lg+f +aeeAa+a++a +++++g
  Sopen06g022520.1 102 QFRGIRQRP-WGKWAAEIRDPRK---GIRVWLGTFNSAEEAARAYDAEARRIRG 151
                       69*******.**********954...3************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-31102161IPR001471AP2/ERF domain
CDDcd000181.33E-31102160No hitNo description
SuperFamilySSF541712.48E-21102161IPR016177DNA-binding domain
PROSITE profilePS5103223.354102159IPR001471AP2/ERF domain
SMARTSM003806.4E-36102165IPR001471AP2/ERF domain
PfamPF008471.0E-10103151IPR001471AP2/ERF domain
PRINTSPR003671.9E-10103114IPR001471AP2/ERF domain
PRINTSPR003671.9E-10125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MCGGAIISDL VPPSRISRRL TADFLWGTSD LNNKKKNPSN YHSKPLSSKF IDLEDEFEAD  60
FQHFKDYSDD DEDVKAFGPK SVRSGDSNCD ADRSSKRKRK NQFRGIRQRP WGKWAAEIRD  120
PRKGIRVWLG TFNSAEEAAR AYDAEARRIR GKKAKVNFPD EAPVSVSRRA VKQNPQKALR  180
EETLNTVQPN MTYISNLDGG SDDSFSFFEE KPATKQYGFE NVSFIAGDMG LGSVSPSAGT  240
NVYFSSDEGS NTFDCSDFGW AEPCARTPEI SSVLSEVLET NETHFDEDAR PEKKLKSCSS  300
TSLTDDGNTV NTLSEELSAF ESQMKFLQIP YLEGNWDASV DAFLNTSAIQ DGGNAMDLWS  360
FDDVPSLMGG AY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20102159260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A1e-191011611374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0442350.0AY044235.1 Lycopersicon esculentum transcription factor JERF1 (JERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079440.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLQ8LGR90.0Q8LGR9_SOLLC; JERF1
STRINGSolyc06g063070.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-68related to AP2 12