PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g030580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 201aa    MW: 22601.2 Da    PI: 8.4679
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g030580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.53.3e-18118168255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+++AeIrdps   k  r++lg+f+t  +Aa+a++ a+ k++g
  Sopen05g030580.1 118 NYRGVRRRP-WGKFAAEIRDPSR--KGSRIWLGTFDTDIDAARAYDCAAFKMRG 168
                       59*******.**********854..34*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-31117176No hitNo description
PfamPF008472.8E-13118168IPR001471AP2/ERF domain
PROSITE profilePS5103224.579118176IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-23118177IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.7E-32118177IPR001471AP2/ERF domain
SMARTSM003806.6E-37118182IPR001471AP2/ERF domain
PRINTSPR003674.5E-13119130IPR001471AP2/ERF domain
PRINTSPR003674.5E-13158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MTKQDEGLTL ELIRQHLLED FTTTESFINS LNSCFSDHIS SSDDISPVFT SVKTEPSTSN  60
SLSDSPNSSY PNEPNSPISR YFNLRSDFPE FKIDSDTILS PVFDCSAGSN EDNSKKKNYR  120
GVRRRPWGKF AAEIRDPSRK GSRIWLGTFD TDIDAARAYD CAAFKMRGRK AILNFPLDAG  180
KSGAPANIGR KRRRENKMEL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-28114177164ATERF1
3gcc_A1e-28114177164ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1189193RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074942.11e-147ethylene-responsive transcription factor ERF106-like
TrEMBLQ84XB01e-142Q84XB0_SOLLC; Ethylene response factor 4
STRINGSolyc05g052030.1.11e-143(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.13e-46ERF family protein