PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g029780.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 489aa    MW: 54417.7 Da    PI: 6.85
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g029780.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.21e-13206265155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++  g  ++ ++++lg ++ +++Aa+ ++ a++k++g
  Sopen05g029780.1 206 SIYRGVTRHRWTGRYEAHLWDnSCKrEGqaRKgRQVYLGGYDKEDKAARSYDLAALKYWG 265
                       57*******************999975578446**********99*************98 PP

2AP249.41.1e-15310359355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       y+GV++++++grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Sopen05g029780.1 310 YRGVTRHHQQGRWQARIGRVAG---NKDLYLGTFATEEEAAEAYDIAAIKFRG 359
                       9***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-10206265IPR001471AP2/ERF domain
SuperFamilySSF541715.43E-16206275IPR016177DNA-binding domain
CDDcd000187.25E-22206275No hitNo description
Gene3DG3DSA:3.30.730.101.2E-14207274IPR001471AP2/ERF domain
PROSITE profilePS5103218.769207273IPR001471AP2/ERF domain
SMARTSM003803.2E-27207279IPR001471AP2/ERF domain
PRINTSPR003673.2E-6208219IPR001471AP2/ERF domain
CDDcd000184.24E-11308367No hitNo description
SuperFamilySSF541717.85E-18308368IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.6E-18309367IPR001471AP2/ERF domain
SMARTSM003803.1E-30309373IPR001471AP2/ERF domain
PROSITE profilePS5103219.335309367IPR001471AP2/ERF domain
PfamPF008475.4E-10310359IPR001471AP2/ERF domain
PRINTSPR003673.2E-6349369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MLNSSSSSSS SMLQSNAPSA PTHQYYFADN FYPHGWMNVP KTHELMYSGD EKQIYHPNVF  60
IDSQIIQHHH HHPPPKLEDF FGGATETQDS SSLTHIYDHH HHGGGAAAGD GGYFNNGQQD  120
VNHNYSIAVG GFQTLPTNSG SEVDDSQVMG SEFATESSNE MGYPPIITLG VNNNNNNNTN  180
SEKAIVTAVN SESCKKITDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCK REGQARKGRQ  240
VYLGGYDKED KAARSYDLAA LKYWGTTATT NFPASDYTKE IEEMKHMTKQ EFIASLRRKS  300
SGFSRGASMY RGVTRHHQQG RWQARIGRVA GNKDLYLGTF ATEEEAAEAY DIAAIKFRGL  360
NAVTNFEMNR YDVEAIMKSS LPIGGAAKRL KISLESEQKQ SLNDNYQQTL HNSINNSSSN  420
NSINFGAISP VSAIPCGLPF DANQPYYHHS FFPHLQYSSN DGGASDHTSG TMPLLPPPAE  480
IFIWPHQSY
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00589DAPTransfer from AT5G65510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075209.10.0AP2-like ethylene-responsive transcription factor AIL6
SwissprotQ52QU21e-145AIL6_ARATH; AP2-like ethylene-responsive transcription factor AIL6
TrEMBLA0A3Q7GIR40.0A0A3Q7GIR4_SOLLC; Uncharacterized protein
STRINGSolyc05g051380.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25802449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.11e-139AINTEGUMENTA-like 6
Publications ? help Back to Top
  1. Krizek BA
    Intronic sequences are required for AINTEGUMENTA-LIKE6 expression in Arabidopsis flowers.
    BMC Res Notes, 2015. 8: p. 556
    [PMID:26459062]
  2. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  3. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  4. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]