PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g008450.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 401aa    MW: 44174.7 Da    PI: 8.037
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g008450.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-175099255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Sopen05g008450.1 50 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 99
                      69*******.**********93....35999**********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.0E-2950106IPR001471AP2/ERF domain
PfamPF008471.0E-105099IPR001471AP2/ERF domain
SMARTSM003804.1E-3350113IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-2150107IPR016177DNA-binding domain
PROSITE profilePS5103222.08950107IPR001471AP2/ERF domain
CDDcd000185.96E-3050106No hitNo description
PRINTSPR003672.3E-95162IPR001471AP2/ERF domain
PRINTSPR003672.3E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEDAMRRLNQ ESDLPLQNTT NSSTLNKTRS SCSSNKRSLK DTTTGPSAVR YRGVRRRPWG  60
RYAAEIRDPQ SKERRWLGTF DTAEEAACAY DCAARAMRGV KARTNFVYPP CPTPTQPTST  120
NDALFNIHSS YNSLKLTSPY YHQSSNTLKD LSNRPFFHSS SPYGSTGRGH VIGQKSNDSL  180
NMLLFRELLG SNSSNNNNTN NLNVTSSMNM PNLYEQLPNF TMNRNTNSFC SYLPNSSNTV  240
IPSSSVMTTQ VPKFDNTVHC TINNNSSSSA TANDDSAAGM DFFPSESSDS GLLEEALNGF  300
FPKPKPIKSV PSSLPNYSTK GEFCNIFSQQ LQPPQQQQQE QSNNGGLNSD FGLLSSSSSL  360
SSFPVDYFPG NLQVSPGDNI MGDIFQYPDL LSIFAAKLQN A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-20501061471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239483.20.0ethylene-responsive transcription factor ESR1-like
TrEMBLA0A3Q7H8Y90.0A0A3Q7H8Y9_SOLLC; Uncharacterized protein
STRINGSolyc05g013540.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.13e-13ERF family protein