PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g005700.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 1326aa    MW: 151013 Da    PI: 9.8469
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g005700.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.81.6e-37110812142133
               TCP    2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaak 92  
                        +gkkdrhski+T++g RdRR+Rls+++a++fFdLqd+LGfdk+s+tieWL+ ++k aikel ++ s+ +                      
  Sopen05g005700.1 1108 TGKKDRHSKICTAQGVRDRRMRLSLQIARKFFDLQDMLGFDKASNTIEWLFSKSKNAIKELSRNISQEN---------------------- 1176
                        79**************************************************************33333...................... PP

               TCP   93 saakskksqksaasalnlakesrakarararertrekmrik 133 
                           +s++++++++ +l +  +s +  ra+ re+t+ekm+ik
  Sopen05g005700.1 1177 ---NSSDQNNDDHRKLRKIGSSDKPIRAKTREKTKEKMMIK 1214
                        ...22334444454455555677777777777777777766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139764.4E-12234285IPR025724GAG-pre-integrase domain
PfamPF006651.7E-15285369IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.102.2E-18286372IPR012337Ribonuclease H-like domain
SuperFamilySSF530981.39E-20286393IPR012337Ribonuclease H-like domain
PROSITE profilePS5099411.249321368IPR001584Integrase, catalytic core
PfamPF077276.1E-90532777IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
SuperFamilySSF566722.45E-18533751No hitNo description
SuperFamilySSF566722.45E-18791944No hitNo description
CDDcd092724.64E-47866976No hitNo description
PfamPF036341.0E-3611081224IPR005333Transcription factor, TCP
PROSITE profilePS5136936.87311101168IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0015074Biological ProcessDNA integration
GO:0003676Molecular Functionnucleic acid binding
Sequence ? help Back to Top
Protein Sequence    Length: 1326 aa     Download sequence    Send to blast
MDSSKLGIEK FDGSDSSFWK MQIEDYLYQK DLHEPLTGVK PQSMTEEKWN LKDRQALGLI  60
RLTLSRNVAF NIVKDKTTSG LLKALSNISR GSEKLKFDEI RDVVLSESIR KREVRDSSGS  120
ALSVDRRGRK DIGDALIPSV NSPVYLANNK ALEIQGKGDV CIKTTSGNHW TLEDVKYIPR  180
IKKNLISVGQ LDSTRYAAKF GKGSWKIVKG AMVVARDTKF GTLYTTAGCI NMAVVAEGAS  240
DSCLWHNRLG HMSAKGMKML IAKRALEGLK SVDMGLCESC VMGKQKRVWV YFLKHKSDVF  300
ATFKKWKAEV ENQTGLKVKC LRSDNGGEYD KSEFKAFCAA EGIRMMRTVP GKARQNGIAE  360
RMNRTLNERA RRFKIPEEVW TGKELKYSHL RTFGCTAYVH VDPEKRDKLD AKAVKYYFIG  420
YGSDLFGYRF WDDKNIKILR HCDVTFDESV MYKNREQKVL EITKQVGVEV VLEKSNPRDV  480
ESDNQPTPTE ESEVEQVTPE QVLRRSSRTI RAPDRWRIRS SGSKPWMILE KNDTWVLTEL  540
PAGKRALLNK WVFRIKTEPD GKRRFKARLV VKGYSQRKGI DYAEIFSPVV KLTSIRILLS  600
IVASENLHLE QMDVKTTFLL GDLDKEIYMQ QSEGFVVPGK EHMVCKLTRS LYGLKQAPRK  660
WYKKFDSFMI KSGFCKVVKD PCCYFKKYTD SYVFLLLYVN DMLIAGSSMR EINNLKTRLS  720
AAFEMKDLGP AKQILGMKIS RDRSAGTLNL YQELYIEKVL SRFRVNDAKP RTTPLENNFK  780
LSKEQSPKTV EERDHMTLFP YASAVGSLMY AMVCTRPDIA HAVGVVSRYM ANPGKEHWEA  840
VKWLLRYLRG TSSTSLCFGK GKVTLQGFVD ADLGGDVDSS KSTSGYIYTI GGTAVSWMSR  900
LQKCVSLSST EAEYVAIAEA GKEMIWLTDY LKELVYHSKT KHIRRRYHFT RRAVEDDDMC  960
LEKIEGAKNP TDMLTKCVDV GKLGLCKTSV ELLKQSYSTH DQNPNSPSRV VEDEDHPFFL  1020
NNFFPSPFLD DHELPLNQIF SQKHHQKEEV SDNHDINQAD PDNTIKDNHG VDNSRSTQLN  1080
TKIMGDQSSN PAISSKKRKL SAKPRRRTGK KDRHSKICTA QGVRDRRMRL SLQIARKFFD  1140
LQDMLGFDKA SNTIEWLFSK SKNAIKELSR NISQENNSSD QNNDDHRKLR KIGSSDKPIR  1200
AKTREKTKEK MMIKLGHNKK GNQELDETNP ISTIDPKLGS NSKSLEHQFA NVGIMERYLG  1260
GASYSSITSI FDYDNNGVIK GNIDISDNCF NMGILENCSM TNEVQIPFSG NNPSSIYLDN  1320
SRFHQF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110961106KRKLSAKPRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotP109780.0POLX_TOBAC; Retrovirus-related Pol polyprotein from transposon TNT 1-94
TrEMBLA0A2N9JB150.0A0A2N9JB15_FAGSY; Uncharacterized protein
STRINGSolyc11g062200.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.12e-29TCP domain protein 12
Publications ? help Back to Top
  1. Grandbastien MA,Spielmann A,Caboche M
    Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics.
    Nature, 1989. 337(6205): p. 376-80
    [PMID:2536143]