PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g005470.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 488aa    MW: 53524.9 Da    PI: 6.8462
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g005470.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.81.3e-09200241546
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 
                       k  rr+++NReAAr+sR+RKka++++Le+   +L++  ++Lk
  Sopen05g005470.1 200 KTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLSQLEQELK 241
                       7789*************************9888888887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.8E-7194243No hitNo description
SMARTSM003386.3E-7196261IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.507198242IPR004827Basic-leucine zipper domain
PfamPF001701.3E-6200241IPR004827Basic-leucine zipper domain
CDDcd147083.42E-21200251No hitNo description
SuperFamilySSF579591.61E-6200242No hitNo description
PROSITE patternPS000360203218IPR004827Basic-leucine zipper domain
PfamPF141448.3E-30285358IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MQAFKAAAVT INNNNNNSNS NSNSSMYCHS SYYLRGDEGS RLAARFADIG ELEQSTGFTQ  60
DDAVDLSRST VYGEMRPNNV GIVSCNNNNL HFAELNTSIG SSETGVETGR FMLQKAQTGM  120
VGGGGGGGGG GVVGGAVALG NVQHFENWGD SGIADHSQQT DTSTDVDTDE RNHQGQGVQH  180
GALIAVDSMD LSKVKLGDQK TLRRLAQNRE AARKSRLRKK AYVQQLENSR LKLSQLEQEL  240
KRARQQGIFI ANGYAGDQSL SAGGNGALAF DMDYARWLDE HQRLISDLRS AVNSHRGDNE  300
LRHLVDGVMS HYDEKFKLKS VGLKADVFHM LSGMWKTPVE RCFMWLGGFR SSELLKILGN  360
HLEPFTEQQL IGICNLQQSS QQAEDALSQG MEALQQLLVD TLSSTSLGPS GSGNVADYMG  420
QMAIAMNQLA TLENFLYQAD LLRQRTLQQL HRILTTRQAA RALLVISDYM SRLRALSSLW  480
LARPKDQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754441e-150HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074554.10.0PREDICTED: transcription factor HBP-1b(c38)-like
SwissprotQ415581e-176HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLK4BXE00.0K4BXE0_SOLLC; Uncharacterized protein
STRINGSolyc05g009660.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8202385
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68640.11e-132bZIP family protein