PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g003300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 326aa    MW: 36040.1 Da    PI: 7.6119
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g003300.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.34.5e-41312042137
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..... 88 
                       ++k ++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+ +  + s +ss ++s s+     
  Sopen05g003300.1  31 TKKPTTTKDRHTKVDGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANYSsLNISLRSSRHHSASNylahn 123
                       78999***********************************************************99999777666666666666666667777 PP

               TCP  89 ................................kaaksaakskksqksaasalnlakesrakarararertrekmriknkln 137
                                                        ++ +a+++  ++++++ + n ++  r k r++ ++  +++ +++n l+
  Sopen05g003300.1 124 hnnfghvyhdrnyfngvglfssennsffpsgnLNMLQAKEELCDDHDDNDNDNDNNTGRIKRRSEDQDLLQNNYHMSNMLQ 204
                       777999999999999999999999999999863333333444555555656677778899999998888888888887766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-4135195IPR005333Transcription factor, TCP
PROSITE profilePS5136927.6363791IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MMTTSSSDAP CVNHNQKSKT HQDKKQQPQQ TKKPTTTKDR HTKVDGRGRR IRMPATCAAR  60
VFQLTRELGH KSDGETIEWL LQQAEPAVIA ATGTGTIPAN YSSLNISLRS SRHHSASNYL  120
AHNHNNFGHV YHDRNYFNGV GLFSSENNSF FPSGNLNMLQ AKEELCDDHD DNDNDNDNNT  180
GRIKRRSEDQ DLLQNNYHMS NMLQSSTYGS IPASHQIGQI PATTLYMMTN NNNNNSSHHH  240
DLNNCSMWGS SSNNNNIENS NIRGGLLNFM NFHQPILGTR GGGGGTAAEG QWGMLTAAMN  300
SYRQSGGHAS GSSNQHNGGD DHQHHS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074857.10.0transcription factor TCP15-like
TrEMBLG3BGW20.0G3BGW2_SOLLC; TCP transcription factor 23
STRINGSolyc05g007420.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA139471214
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-41TCP family protein