PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g036490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 748aa    MW: 85063.2 Da    PI: 6.6848
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g036490.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR192.36.3e-2956146291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       fYn+YA++vGF +r+s+ ++s+r+++i +r++vCskeg++ + ++  ++k +r+r ++r+gCka+l+vkk ++gkw +tk+ ++HnHel+p
  Sopen04g036490.1  56 FYNSYARRVGFGTRVSAYRRSRRDNSISTRQLVCSKEGFNPRPDNGaQHKPKRQRIVSRVGCKAHLTVKKLTSGKWAITKFIKDHNHELVP 146
                       9**************************************98887774778899************************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.7E-2756146IPR004330FAR1 DNA binding domain
PfamPF105511.7E-26264354IPR018289MULE transposase domain
PfamPF044341.2E-10532579IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.843548580IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-9555582IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 748 aa     Download sequence    Send to blast
MESEPLILEN EFDMCSAEEE DNLNASGVDL GQQCSSSDLE PYEGMEFESE QAARIFYNSY  60
ARRVGFGTRV SAYRRSRRDN SISTRQLVCS KEGFNPRPDN GAQHKPKRQR IVSRVGCKAH  120
LTVKKLTSGK WAITKFIKDH NHELVPPDQV HLIRSHRHVS GPARSLIDTL QAAGLGATGV  180
MSVLIKQSGG LNNVGFTKVD CQNYMNQSRQ RTLGSAAHYI FEYLKQKQSE DPDFFYAVQD  240
GSSGNIFWAD STSRKNYSYF GDTVTFDTTY RTHRYRVPFA PFIGVNHHCQ PVLFGCALLL  300
NESESSFIWL FDNWLAAMSG CHPISITSDH DRIIRSAILD VFPGARHRFC KSNIFREAQE  360
RLSHSLQSFP TFEAEFQKCV NLTETIAEFE LCWGSLLGRY NLIDDEWLQS MYDARQQWVP  420
VYLRDTFFGD TSIAKTSDST SSFFDGYIDA STNIHILMSQ YEKAIASRHE KEVKAEYDTI  480
NIAPILKTPS PMEKQAANIY TREIFLMFQQ ELMETLAYPA TVINDAGSDV IFQVVKFGED  540
HKVHYVQYNV VEKKASCSCQ LFDFSGILCR HILAVFRVKN VLRLLSHYVL KRWTRKAKSE  600
VLLDEDKLGL PSSHNDSFTD RFEKLSLEAT NYVKEGVDSK SVYLVALDAL CEASKKVAAA  660
MCGTPAQPLS QDMNKEKEFN LNGNQTDCDD PSLLSEDEKI KELTTAVVYA TETCEAYRAK  720
LLSILREMEE QKLRISLKVQ SMRVHRIT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104109KPKRQR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073245.10.0protein FAR1-RELATED SEQUENCE 5-like
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3Q7GBB00.0A0A3Q7GBB0_SOLLC; Uncharacterized protein
STRINGXP_009798613.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]