PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g028490.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 157aa    MW: 17972.2 Da    PI: 6.9438
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g028490.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.28.5e-182467148
               AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48
                      ++y+GVr+++ +gr++AeIr p++   ++r++lg+f+taeeAa a++ 
  Sopen04g028490.1 24 TKYHGVRRRP-WGRYAAEIRNPNT---KQRHWLGTFDTAEEAALAYDI 67
                      69********.**********933...5******************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.38E-292482No hitNo description
PfamPF008475.9E-122466IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.1E-272582IPR001471AP2/ERF domain
PROSITE profilePS5103220.62583IPR001471AP2/ERF domain
SMARTSM003807.4E-292589IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-182583IPR016177DNA-binding domain
PRINTSPR003672.3E-92637IPR001471AP2/ERF domain
PRINTSPR003672.3E-94864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MENITNIPKL HVRNLVRRSS RHSTKYHGVR RRPWGRYAAE IRNPNTKQRH WLGTFDTAEE  60
AALAYDISSI NFCGIENART NFVYPFSSFP SPYNNSPAPP PQPLPPPPPS MPELEVVENN  120
CMKIEMNDDI NDDDESLVIA SILQSFRYTN TLDKLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-1525741464Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired to prevent the formation of axillary meristems within the spikelet meristem and permit the subsequent establishment of floral meristem identity (PubMed:12835399, PubMed:14503923). Mediates the transition from spikelet to floret meristem (PubMed:14503923). Determines the transition from panicle branching to spikelet formation. May specify floral organ identity by regulating the class B genes (Agamous-like genes) MADS6 and MADS17, as well as class E genes MADS1, MADS7 and MADS8 in floral meristem (PubMed:26744119). Possesses transactivation activity (PubMed:12835399). {ECO:0000269|PubMed:12835399, ECO:0000269|PubMed:14503923, ECO:0000269|PubMed:26744119}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073183.11e-114ethylene-responsive transcription factor LEP-like
SwissprotQ8H3Q12e-24FZP_ORYSJ; Ethylene-responsive transcription factor FZP
TrEMBLA0A3Q7G6U52e-94A0A3Q7G6U5_SOLLC; Uncharacterized protein
STRINGSolyc04g072300.1.13e-95(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.17e-27ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhu QH,Hoque MS,Dennis ES,Upadhyaya NM
    Ds tagging of BRANCHED FLORETLESS 1 (BFL1) that mediates the transition from spikelet to floret meristem in rice (Oryza sativa L).
    BMC Plant Biol., 2003. 3: p. 6
    [PMID:14503923]
  3. Liu HQ, et al.
    [Towards the positional cloning of a spikelet identity gene frizzle panicle (FZP) in rice (Oryza sativa L.)].
    Yi Chuan Xue Bao, 2003. 30(9): p. 811-6
    [PMID:14577371]
  4. Jang S, et al.
    The OsFOR1 gene encodes a polygalacturonase-inhibiting protein (PGIP) that regulates floral organ number in rice.
    Plant Mol. Biol., 2003. 53(3): p. 357-69
    [PMID:14750524]
  5. Rossini L, et al.
    Candidate genes for barley mutants involved in plant architecture: an in silico approach.
    Theor. Appl. Genet., 2006. 112(6): p. 1073-85
    [PMID:16501940]
  6. Yi G, et al.
    Morphological and molecular characterization of a new frizzy panicle mutant, "fzp-9(t)", in rice (Oryza sativa L.).
    Hereditas, 2005. 142(2005): p. 92-7
    [PMID:16970618]
  7. Duan Y, et al.
    Genetic analysis and mapping of gene fzp(t) controlling spikelet differentiation in rice.
    Sci. China, C, Life Sci., 2003. 46(3): p. 328-34
    [PMID:18763148]
  8. Routledge AP, et al.
    Magnaporthe grisea interactions with the model grass Brachypodium distachyon closely resemble those with rice (Oryza sativa).
    Mol. Plant Pathol., 2004. 5(4): p. 253-65
    [PMID:20565594]
  9. Lee DY,An G
    Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice.
    Plant J., 2012. 69(3): p. 445-61
    [PMID:22003982]
  10. Derbyshire P,Byrne ME
    MORE SPIKELETS1 is required for spikelet fate in the inflorescence of Brachypodium.
    Plant Physiol., 2013. 161(3): p. 1291-302
    [PMID:23355632]
  11. Poursarebani N, et al.
    The Genetic Basis of Composite Spike Form in Barley and 'Miracle-Wheat'.
    Genetics, 2015. 201(1): p. 155-65
    [PMID:26156223]
  12. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]
  13. Ma X, et al.
    Genomic structure analysis of a set of Oryza nivara introgression lines and identification of yield-associated QTLs using whole-genome resequencing.
    Sci Rep, 2016. 6: p. 27425
    [PMID:27251022]