PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g027110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 340aa    MW: 37402.6 Da    PI: 7.1834
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g027110.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.24.8e-10184242563
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       kr++r   NR +A rs +RK  ++ eLe+kv++L++e ++L  ++  l+   + l++e+
  Sopen04g027110.1 184 KRAKRILANRQSAARSKERKIRYTSELERKVQTLQSEATTLSAQITVLQRDNSGLTTEN 242
                       9********************************************99999998888877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.3E-17180244IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.978182245IPR004827Basic-leucine zipper domain
SuperFamilySSF579598.44E-11184236No hitNo description
PfamPF001709.6E-9184242IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.4E-11184239No hitNo description
CDDcd147032.76E-23185235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007231Biological Processosmosensory signaling pathway
GO:0008272Biological Processsulfate transport
GO:0009294Biological ProcessDNA mediated transformation
GO:0009652Biological Processthigmotropism
GO:0009970Biological Processcellular response to sulfate starvation
GO:0045596Biological Processnegative regulation of cell differentiation
GO:0051170Biological Processnuclear import
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
GO:0051019Molecular Functionmitogen-activated protein kinase binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MDPKFTGKPI SIPFLPGRID LDQMADTPTR IARHRRAQSE TFFRLPEFDD DILLDDVVAD  60
FNLDISAPAL SPSTDTHMQP ANSADSSSNG PGADHNPRPL NHFRSLSVDA DFFDGLEFGE  120
AGATTPAASE EKKMIGLGSG SSSRHRHSNS MDGSFSAASF EAESSVKKAM APDRLAELAL  180
IDPKRAKRIL ANRQSAARSK ERKIRYTSEL ERKVQTLQSE ATTLSAQITV LQRDNSGLTT  240
ENKELKLRLQ ALEQQAHLRD ALNEALREEL QHLKITAGQM SAANGSRGPR PHFPPQPQSF  300
VQCGNHHTQQ QQPHMPQSTT STQNIGGQTQ PSFMNFNNRG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00184DAPTransfer from AT1G43700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3353430.0HQ335343.1 Solanum tuberosum repression of shoot growth mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071489.10.0PREDICTED: transcription factor VIP1
SwissprotQ9MA758e-84VIP1_ARATH; Transcription factor VIP1
TrEMBLM0ZJL60.0M0ZJL6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000021000.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25072351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43700.16e-71VIRE2-interacting protein 1