PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g023900.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 370aa    MW: 41748.6 Da    PI: 5.3327
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g023900.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.7e-1085121439
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLee.kvkeLe 39 
                       +k+ rr+++NReAAr+sR+RKka++++Le+ k k L+
  Sopen04g023900.1  85 DKVRRRLAQNREAARKSRLRKKAYVQQLENsKLKLLQ 121
                       799**************************82444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1706.1E-781129No hitNo description
SMARTSM003381.2E-482145IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.96784128IPR004827Basic-leucine zipper domain
PfamPF001701.3E-685121IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.93E-686127No hitNo description
PROSITE patternPS00036089104IPR004827Basic-leucine zipper domain
PfamPF141441.0E-29174247IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNSSTYSQFV ASKRMGICDP IHQIGMWGDF RGSSFPDTLI LEVENCLENE MPIMEKRLEN  60
EIEEPSQVTV GTSNRYEPET TKRIDKVRRR LAQNREAARK SRLRKKAYVQ QLENSKLKLL  120
QLEQELERNR QQGLYVGDGL DASQIGCSGT ANSGIASFEM EYGHWVEEQD RLTDDLRNAL  180
NSQMGEIELR ILVEGCLNHY FDLFRLKATA ANADVLYLMS GTWKTSAERF FLWIGGFRPS  240
ELLKVLTPHV EPLSDQQIQE VSNLTQSCQQ AEDALSQGMV KLHQILAEAV AAGTLGEGVI  300
LPQMTATIEK LEALVRFVNQ ADHLRQETLL QMSCILAPHQ SAQGLLALGE YFKRLRALSS  360
LWAGRLCEPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3877850.0AF387785.1 Lycopersicon esculentum leucine-zipper transcription factor (NITF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073551.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A-like isoform X1
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLQ94EX60.0Q94EX6_SOLLC; Leucine-zipper transcription factor
STRINGSolyc04g054320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-140bZIP family protein