PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g020090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 397aa    MW: 43971.1 Da    PI: 9.0334
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g020090.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.6e-17111160155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Sopen04g020090.1 111 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 160
                       78*******************......55************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.2E-9111160IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16111169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.4E-17112168IPR001471AP2/ERF domain
PROSITE profilePS5103217.794112168IPR001471AP2/ERF domain
SMARTSM003802.0E-32112174IPR001471AP2/ERF domain
CDDcd000181.98E-11112170No hitNo description
SMARTSM003800.019204245IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MLDLNNDSVF FKDDSVTSNT DSNSSSFQPS LSTLNFSILK SDRVFEIEDE SSTTGGGDML  60
TRQLFPVKDE IQGQSQCWLN LSVSESGGLE VPVYKPPVHK KSRRGPRSRS SQYRGVTFYR  120
RTGRWESHIW DCGKQVYLGG FDTAHAAARA YDRAAIKFRG VDADINFNIT DYNEDMKQMK  180
NLSKEEFVQV LRRHSNGFSR GNSKYRGVTL HKCGRWEGQF IGKKAYDKCD GREAATNFVA  240
NTYEREKKED KRDGGSGENL DLNLWISPPL EGLKGGEIGR NLHFNFGGRD MVIGKTFETQ  300
SSSIVPQGPA TMSKLSIFTG MYPGFPPHST EGAMMKAEAA SSSPVLPNWG WKIHSQGVVT  360
PVPVFSSSAA SSGFSTATTL HTNSLLPPSN QLRLPTN
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015074144.10.0ethylene-responsive transcription factor RAP2-7-like
SwissprotQ9SK031e-71RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A3Q7GVN90.0A0A3Q7GVN9_SOLLC; Uncharacterized protein
STRINGSolyc04g049800.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.22e-70related to AP2.7