PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g017180.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 284aa    MW: 32397.7 Da    PI: 6.0031
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g017180.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP105.77.6e-3390190194
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.... 88 
                       a+g+kdrhsk++T++g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l + +++ +s   ++++ + s ++++s+    
  Sopen04g017180.1  90 ATGRKDRHSKVSTAKGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKEAKAAIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPefsq 182
                       589***********************************************************9994444433345555555555444444433 PP

               TCP  89 ..kaaksa 94 
                         +  +++
  Sopen04g017180.1 183 enRGVPNS 190
                       32333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.4E-3191186IPR005333Transcription factor, TCP
PROSITE profilePS5136930.01393151IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MNHQFQVSDE EDGSEEEEEE EEEVFQENDI GNLQSHYQNQ QMPQSLCKKP EKWANFTVSE  60
QELNKGTRRM KPKRAKTDVI EGHGGRIIRA TGRKDRHSKV STAKGPKDRR VRLSPNTAIQ  120
FYDVQDRLGY DRPSKAIDWL IKEAKAAIDA LGEFPNNFHS TKLNPKKMQY SFDQEQSPEF  180
SQENRGVPNS ECGVQDKQQE VNYDIPNLFS SSDGLKIPFL SDLQSYPHGH FLNFQSLQDD  240
TILSSGNHHQ GSFFTTTSVN HFPSVLSQIR CFLTGNPFSP VSSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2098151154Putative transcription factor PCF6
5zkt_B6e-2098151154Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16773RRMKPKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069120.10.0transcription factor TCP10-like
TrEMBLG3BGU20.0G3BGU2_SOLLC; TCP transcription factor 1
STRINGSolyc02g077250.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.15e-37TCP domain protein 10