PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g006680.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 234aa    MW: 26988.9 Da    PI: 6.678
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g006680.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18110160255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y GVr ++ +g+++AeIrd + ng   r++lg+f t+eeAa a+++a++ ++g
  Sopen04g006680.1 110 HYIGVRKRP-WGKYAAEIRDSTRNG--IRVWLGTFNTCEEAALAYDQAALTMRG 160
                       799******.**********44465..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-27109168No hitNo description
PfamPF008472.6E-13110160IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-28110169IPR001471AP2/ERF domain
PROSITE profilePS5103221.338110168IPR001471AP2/ERF domain
SMARTSM003807.6E-34110174IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-22110169IPR016177DNA-binding domain
PRINTSPR003677.0E-9111122IPR001471AP2/ERF domain
PRINTSPR003677.0E-9134150IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEFSSPKTQY PNFNFFQDQS SLPWNDDQHF LDEYLTNIDQ NNDHFLPEST SSFLTSNESY  60
RWEVSSSNLH QLPRSCSSSN DTNSSKESNN HHEIDEVTSH HHDKNNSTKH YIGVRKRPWG  120
KYAAEIRDST RNGIRVWLGT FNTCEEAALA YDQAALTMRG PLALLNFPMD KVRESLENIK  180
YICEDGISPA AVLKATNKMR RVKHKRNRKK RNVLVFEDLG AELLDELLMS TSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-28109169161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198205MRRVKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the GCC-box cis-acting elements found in the promoter regions of ethylene-responsive genes (PubMed:23057995). Acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates pathogen-responsive genes (PubMed:28733419). {ECO:0000269|PubMed:23057995, ECO:0000269|PubMed:28733419}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and infection with the fungal pathogen Botrytis cinerea. {ECO:0000269|PubMed:28733419}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072958.11e-176ethylene-responsive transcription factor 1B-like
SwissprotA0A3Q7I5Y93e-49ERFC3_SOLLC; Ethylene-response factor C3
TrEMBLA0A3Q7G0341e-152A0A3Q7G034_SOLLC; Uncharacterized protein
STRINGSolyc04g014530.1.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-41ethylene response factor 1
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Pirrello J, et al.
    Functional analysis and binding affinity of tomato ethylene response factors provide insight on the molecular bases of plant differential responses to ethylene.
    BMC Plant Biol., 2012. 12: p. 190
    [PMID:23057995]
  3. Du M, et al.
    MYC2 Orchestrates a Hierarchical Transcriptional Cascade That Regulates Jasmonate-Mediated Plant Immunity in Tomato.
    Plant Cell, 2017. 29(8): p. 1883-1906
    [PMID:28733419]