PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g006170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 364aa    MW: 40455.5 Da    PI: 6.6917
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g006170.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20109158255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae+Aa+a+++ ++k++g
  Sopen04g006170.1 109 RYRGVRQRP-WGKWAAEIRDPY----KaARVWLGTFDTAEDAARAYDETALKFRG 158
                       7********.**********76....35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-36109172IPR001471AP2/ERF domain
PROSITE profilePS5103225.001109166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-32109167IPR001471AP2/ERF domain
PfamPF008471.6E-13109158IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-22109167IPR016177DNA-binding domain
PRINTSPR003675.3E-12110121IPR001471AP2/ERF domain
CDDcd000182.50E-28117168No hitNo description
PRINTSPR003675.3E-12132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MSVMVTALTR VITGEDRILN QENNNHNNII GSSSLNEFSG GVGEKRGREE QQYFLSDIIS  60
SSKVGEDSSI NRTIASNTPT TEATFIYTSP TYDHNNNTNI IDCNQPRRRY RGVRQRPWGK  120
WAAEIRDPYK AARVWLGTFD TAEDAARAYD ETALKFRGSK AKLNFPENVR LLPTSSIASQ  180
NVVGNQGFSM EKQSLTNTFP SNSVESNLEF LTEKKVLTST FPVENNMVFS RERQFLTDTF  240
PTEYVPVSSI ISPNTPPNTL STISFFPNSN PIAHTQLSNS NSEINTQYFL NGDFQRGNSS  300
LSLLNQSMFS TTFQYSSSSP SSSSSSRVPF VPSMYISGSQ PISQSSENDF RATSSDSAHH  360
PPSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-25108169163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073065.10.0ethylene-responsive transcription factor ABR1-like
TrEMBLA0A3Q7FZU10.0A0A3Q7FZU1_SOLLC; Uncharacterized protein
STRINGSolyc04g012050.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64750.18e-31ERF family protein