PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g005840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 374aa    MW: 42379.2 Da    PI: 6.5153
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g005840.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.93.4e-1188123540
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLea 40 
                       k+ rr+++NReAAr+sR+RKka++++Le+   +L +
  Sopen04g005840.1  88 KVLRRLAQNREAARKSRLRKKAYVQQLENSKLKLIQ 123
                       788*************************86555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.9E-584144IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.69186128IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.85E-688123No hitNo description
PfamPF001709.7E-888118IPR004827Basic-leucine zipper domain
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.3E-791116No hitNo description
PfamPF141441.7E-30175250IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MNSSTYTQFV ASRRMGICEP IHQIGMWDDF NASCPSTSTT MILEVEKCLE DQIPMMDKRL  60
DIETEDTSHG TVGTSNRYEA ETSKPIEKVL RRLAQNREAA RKSRLRKKAY VQQLENSKLK  120
LIQLEQELDR ARKQGLYVGA GLDASQISYS GTASSGTAVF DTEYGQWVEE QNRQTNDLRN  180
ALHHSQISEA ELRIIVDGCL NHYFELFRVK ATAAKADVLY IMSGMWKTSA ERFFMWIGGF  240
RPSELLKVLT PHLELLTEQQ LREVCNLRQS CQQAEDALSQ GMVKLHQILA EAVAAGQLGE  300
GNYSLPQMGP AIEKLEALVR FVNQADHLRQ ETLQQMSRIL NTLQAAQGLL ALGEYFERLR  360
VLSSHWATRL HEPA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00642SELEXTransfer from LOC107771743Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankS738260.0S73826.1 mas-binding factor MBF2=transcription factor TGA1a homolog [Solanum tuberosum=potatoes, root, mRNA, 1477 nt].
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071669.10.0PREDICTED: TGACG-sequence-specific DNA-binding protein TGA-1A isoform X1
SwissprotP142320.0TGA1A_TOBAC; TGACG-sequence-specific DNA-binding protein TGA-1A
TrEMBLK4BPM00.0K4BPM0_SOLLC; Uncharacterized protein
STRINGSolyc04g011670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7802497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-159bZIP family protein