PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g004580.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 599aa    MW: 67363.1 Da    PI: 9.4574
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g004580.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.18e-125398352
               AP2  3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkk 52
                      ++GVr +k rg +vAe +dp     + kr++ g+f taeeA +a+ a   +
  Sopen04g004580.1 53 FSGVRKRK-RGEYVAEKWDPI----TkKRVWMGTFNTAEEASEAYLAKQCE 98
                      78***999.8******99962....36******************987665 PP

2AP235.91.9e-11217259248
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaia 48 
                       g  G+r  k +gr+ AeIrdp     + k+++lg+f t eeA +a+  
  Sopen04g004580.1 217 GLLGIRKQK-NGRYSAEIRDPI----KhKQVWLGTFNTIEEASQAYLS 259
                       566999888.8*********72....46*****************975 PP

3AP2323e-10308355253
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                       ++ GVr +  +g++ +eI  p    ++ k+++lg+fgt eeA  a+   ++++
  Sopen04g004580.1 308 RIIGVRKNQ-WGKYTSEIINP----ISkKKIWLGTFGTYEEASLAYQSKKLEF 355
                       789***888.*******9996....246*****************98777776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.01E-145192No hitNo description
SMARTSM003802.4E-952113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-1452102IPR001471AP2/ERF domain
PROSITE profilePS5103214.02552110IPR001471AP2/ERF domain
PRINTSPR003674.7E-55364IPR001471AP2/ERF domain
PfamPF008472.7E-75397IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-1053102IPR016177DNA-binding domain
PRINTSPR003674.7E-57591IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-11216260IPR016177DNA-binding domain
PROSITE profilePS5103213.525217276IPR001471AP2/ERF domain
SMARTSM003802.4E-5219263IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.8E-13220257IPR001471AP2/ERF domain
CDDcd000182.27E-13220257No hitNo description
PfamPF008473.7E-5220261IPR001471AP2/ERF domain
PfamPF008475.5E-6307355IPR001471AP2/ERF domain
SMARTSM003803.5E-5308362IPR001471AP2/ERF domain
PROSITE profilePS5103213.735308374IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-11309357IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-13311356IPR001471AP2/ERF domain
CDDcd000183.43E-12311356No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MESAGANAEE NRSSVSAHHM YDKMPSSNSA NKSVPAAERS DSIVLGLQNA ANFSGVRKRK  60
RGEYVAEKWD PITKKRVWMG TFNTAEEASE AYLAKQCEFS TARHMLDEMP SSNSTNKTAN  120
AAAGSTDADH GKKPLIQEIS FSHKSMLLGA EWHNMGKLRK KTFKKKQVCK GFNSNMHASN  180
KPINVMNLES CKQTSCSLSK SADRCNTMKR NPKAKSGLLG IRKQKNGRYS AEIRDPIKHK  240
QVWLGTFNTI EEASQAYLSK KSEFDMLTQG YKEDKPNNCD QTKPESSVGA SLSSGGRNKK  300
MDSPKTTRII GVRKNQWGKY TSEIINPISK KKIWLGTFGT YEEASLAYQS KKLEFREIVK  360
PKKKYSKKIH LNAREKQVGK EKIAVNCEGF QPESVAGETF HANLYMKVGV QRSKEAELQS  420
NMPVDFSTGE KQAGKEKLVV NCEAFQSESA AEVTFHANQY MKFDVQRSKE AELQSNIPVD  480
FITAEKQAEK EKLVVNFEGF LPESAAEETF HANQYMKFDV QRSKESELQS KMPVDFSTWE  540
KQGSQEDTDS SMGKWVQLPD GREVKFSLEL GVPIIDKYGS LLGDFCGFDN LWIYDESIY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016572339.11e-107PREDICTED: uncharacterized protein LOC107870354
TrEMBLA0A3Q7FWN80.0A0A3Q7FWN8_SOLLC; Uncharacterized protein
STRINGSolyc04g009450.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1658755
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-14ERF family protein