PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g004310.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 251aa    MW: 26590.9 Da    PI: 10.3875
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g004310.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP121.31.1e-3735124292
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaak 92 
                       ++kk + +++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++  ++s ++s++  s  ++ +
  Sopen04g004310.2  35 TVKKPPVKDRHSKVDGRGRRIRMPIVCAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTIPASFStVSVSVRNSTA--SLVSSLS 124
                       689******************************************************************87732222222222..2222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136927.6134195IPR017887Transcription factor TCP subgroup
PfamPF036345.8E-3442132IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MSTSAEGNGA IIDSQRQQQQ QQQAPTGVGT NGALTVKKPP VKDRHSKVDG RGRRIRMPIV  60
CAARVFQLTR ELGHKSDGQT IEWLLRQAEP SIIAATGTGT IPASFSTVSV SVRNSTASLV  120
SSLSAPLDQK SSQMISPAPF ILGKRLRSDD ENIENGNKDD VAVAAGAATA VGPTAGFWAV  180
PARPDFGQIW SFAAAPPPEM MSSRFFQQQM GEASAARVGN YLPMTQGHLN LLASLSGPPQ  240
PSSGRRDDDG R
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00524DAPTransfer from AT5G23280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001293140.11e-164TCP transcription factor 14
SwissprotQ9FMX23e-85TCP7_ARATH; Transcription factor TCP7
TrEMBLG3BGV41e-162G3BGV4_SOLLC; TCP transcription factor 14
STRINGSolyc04g009180.1.11e-163(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA39512242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23280.11e-84TCP family protein