PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g002040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 371aa    MW: 42384.6 Da    PI: 8.576
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g002040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP152.42.8e-471052472135
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....sec...eaesssssasnsss 87 
                       +gkkdrhski+T++g RdRRvRls+++a++fFdLqd+LGfdk+sktieWL+ +++ aik+l +++ +++    ++    +++sss +++++s 
  Sopen04g002040.1 105 TGKKDRHSKICTAQGVRDRRVRLSLHIARKFFDLQDMLGFDKASKTIEWLFSKSNNAIKDLSENTPQKEysdgNKIvinSNNSSSYEGKSDSF 197
                       79**************************************************************33333333323345555555555555555 PP

               TCP  88 gkaaksaa.kskksqksaasalnlak.esrakarararertrekmriknk 135
                        ++++++  ++  ++k++  ++n++k esr+karararert+ekm+ik +
  Sopen04g002040.1 198 MSECEENSiNELGKDKEKIMQNNPHKrESREKARARARERTKEKMMIKGN 247
                       588888876666666666666788889*******************9965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-44105243IPR005333Transcription factor, TCP
PROSITE profilePS5136935.882107165IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137012.105224241IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MFPSSNNHDT FSYTSKTFLE RSFTYDHQNP SSSSRQEDNP FFLNFPSPFL DHNESPLSQI  60
LPQDHHVKEG NFTHLSSETS KEEMSIEAKP SSKKRSLSTT PRRRTGKKDR HSKICTAQGV  120
RDRRVRLSLH IARKFFDLQD MLGFDKASKT IEWLFSKSNN AIKDLSENTP QKEYSDGNKI  180
VINSNNSSSY EGKSDSFMSE CEENSINELG KDKEKIMQNN PHKRESREKA RARARERTKE  240
KMMIKGNPSN MFDQLGSSRS NSGFLDQDSN NNSYNTSVNQ EKGSPHEANS QSLEHHFPIQ  300
NYLGGASNSS TIDVGNCFLS FHGNWEINYA PMKSTNYSTT FAGNPSSIYL AQQYQTLDQE  360
KNLSCKHHRL E
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071933.10.0transcription factor TCP12
TrEMBLG3BGW40.0G3BGW4_SOLLC; TCP transcription factor 22
STRINGSolyc04g006980.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24362359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.13e-31TCP domain protein 12