PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g041210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 557aa    MW: 62100.7 Da    PI: 5.4977
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g041210.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.11.6e-16241300155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++t+e+Aa+a++ a++k++g
  Sopen03g041210.1 241 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDTEEKAARAYDLAALKYWG 300
                       78*******************655454478446*************************98 PP

2AP245.22.2e-14345394355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Sopen03g041210.1 345 FRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 394
                       8***************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.0E-13241300IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-16241308IPR016177DNA-binding domain
CDDcd000181.26E-21241308No hitNo description
Gene3DG3DSA:3.30.730.104.1E-15242308IPR001471AP2/ERF domain
PROSITE profilePS5103219.203242308IPR001471AP2/ERF domain
SMARTSM003805.8E-28242314IPR001471AP2/ERF domain
PRINTSPR003671.2E-6243254IPR001471AP2/ERF domain
CDDcd000186.28E-25343404No hitNo description
SuperFamilySSF541712.68E-17343404IPR016177DNA-binding domain
PROSITE profilePS5103218.716344402IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-18344402IPR001471AP2/ERF domain
SMARTSM003805.6E-34344408IPR001471AP2/ERF domain
PfamPF008475.0E-9345394IPR001471AP2/ERF domain
PRINTSPR003671.2E-6384404IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 557 aa     Download sequence    Send to blast
MSNWLGFSLT PDFRIDDDDE EEEVKNYERR NEAAENTPLS VMPLSTNGSL CMMDPFPRCE  60
PTEDCWRYEN HEMSTANNPE EEEGPKLEDF LGCCYSNSPS NEEQQISEIN VNIPPSINQS  120
DHEQHQLEIG ANMKLIPSPQ MIIQNSQFQS SYHEFAHSTS SVYHLPFDGA TSVSGFKSWL  180
RQASVAAPLM SSAEEIVNPT NCQALSLAAA PKKRPVAVKN VGGSKESVPR KSIDTFGQRT  240
SQYRGVTRHR WTGRYEAHLW DNSCRKEGQT RKGRQVYLGG YDTEEKAARA YDLAALKYWG  300
PNTHINSPLN TYEKELEEMK NMNRQEFVAH LRRKSSGFSR GASMFRGVTR HHQHGRWQAR  360
IGRVAGNKDL YLGTFSTQEE AAEAYDIAAI KFRGTSAVTN FDISRYDVKR ICSSSTLITG  420
ELAKRSPSKD SVVCPSSYED YSSCTTSPQP ILAITNGEQL QQPIDSFMDM VPMMGAAGSS  480
SRSSSNAPSP KCSGSGEMSC EFGVGLEYPQ AYYSSVQVQD HKFEDGSKGN DDNSSSSGQI  540
GNMDLVHPVP MFALWNQ
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068407.10.0AP2-like ethylene-responsive transcription factor AIL1 isoform X1
SwissprotQ1PFE11e-139AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A1W5YR730.0A0A1W5YR73_SOLLC; LIA
STRINGSolyc03g123430.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-131AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]