PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g037110.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 256aa    MW: 29236.5 Da    PI: 5.0368
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g037110.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2636.4e-2086135255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa a+++a+++++g
  Sopen03g037110.1  86 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEGAALAYDEAALRFKG 135
                       7********.**********94....45************************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-3286144IPR001471AP2/ERF domain
PfamPF008472.2E-1386135IPR001471AP2/ERF domain
SMARTSM003808.0E-3786149IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2186144IPR016177DNA-binding domain
PROSITE profilePS5103224.90886143IPR001471AP2/ERF domain
PRINTSPR003672.8E-118798IPR001471AP2/ERF domain
CDDcd000183.10E-2794144No hitNo description
PRINTSPR003672.8E-11109125IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MKRSSSNNDQ RDEKDTSNIF PIYSSARSQH DMSAMVSALS QVIGNSSSSS ASGDSSSVHV  60
NPLTLIPQST QQNQSQSSIQ DQERRRYRGV RQRPWGKWAA EIRDPKKAAR VWLGTFETAE  120
GAALAYDEAA LRFKGNKAKL NFPERVQGQF QYYNQHATSS NNTSEQNYPN VHHYADLLLR  180
SDNNIDLNFD VSPNTFYQSF DISQSSMEVP VYHEEQQQVI TTHEEEEEEE DEEDFMKYSG  240
SHFGNSSNWD EYKHGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2785146163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069174.10.0ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH549e-53EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A3Q7FUA21e-122A0A3Q7FUA2_SOLLC; Uncharacterized protein
STRINGSolyc03g118190.2.11e-133(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.14e-31ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]