PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g034080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 341aa    MW: 38729.2 Da    PI: 6.0006
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g034080.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP96.16.9e-30531733112
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssasns 85 
                       g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ k  i+ l+ +          +++s++e+++++ +  ++n 
  Sopen03g034080.1  53 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEATKLDIDTLPPLpvppeyftrfQQPSHEEFSDVRAQWLNANT 145
                       78*************************************************************444444444433333333444444444333 PP

               TCP  86 ssgkaaksaa.kskksqksaasalnlak 112
                       s  ++ +++   s+++++++ ++  l +
  Sopen03g034080.1 146 SYLEHGRNKSiASNEESNQQDNMFTLGN 173
                       3333333333355555555555555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136928.67454112IPR017887Transcription factor TCP subgroup
PfamPF036341.0E-2654164IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0031347Biological Processregulation of defense response
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0009507Cellular Componentchloroplast
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MNSLSGNNFE TKQESNNDSR LTSKTTSAPP SITSRQWGAN KNPRIVRVSR TFGGKDRHSK  60
VCTIRGLRDR RIRLSVPTAI QLYDLQDRLG LSQPSKVVDW LLEATKLDID TLPPLPVPPE  120
YFTRFQQPSH EEFSDVRAQW LNANTSYLEH GRNKSIASNE ESNQQDNMFT LGNHRSSNLP  180
GMPFNSYNYQ WDHQPNSNLS LGHFGHNNSF SSQIDDDQSH QNTSFPLSLG SSSSPFPSSS  240
QLYFNPITTT FQPIVPSPNY ITNHHPIESH DPRANMNHFN FLSSTTSHNN QLVMPTLNLI  300
SSQMKPFSLN NDPRWMSSRD DEDDDDDDDD DDNQPHEGRA I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-1759113155Putative transcription factor PCF6
5zkt_B1e-1759113155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00326DAPTransfer from AT3G02150Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068460.10.0transcription factor TCP5
RefseqXP_015068461.10.0transcription factor TCP5
TrEMBLG3BGU40.0G3BGU4_SOLLC; TCP transcription factor 4
STRINGSolyc03g115010.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.16e-46plastid transcription factor 1