PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g026060.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 283aa    MW: 31480.1 Da    PI: 6.3961
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g026060.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.6e-184291255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Sopen03g026060.1 42 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 91
                      59****999.**********954...5999*******************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.7E-3642105IPR001471AP2/ERF domain
CDDcd000181.89E-2042101No hitNo description
PROSITE profilePS5103222.3264299IPR001471AP2/ERF domain
PfamPF008471.9E-114287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-294299IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-214299IPR016177DNA-binding domain
PRINTSPR003672.5E-104354IPR001471AP2/ERF domain
PRINTSPR003672.5E-106581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006970Biological Processresponse to osmotic stress
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009744Biological Processresponse to sucrose
GO:0009749Biological Processresponse to glucose
GO:0010119Biological Processregulation of stomatal movement
GO:0010353Biological Processresponse to trehalose
GO:0010449Biological Processroot meristem growth
GO:0010896Biological Processregulation of triglyceride catabolic process
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0032880Biological Processregulation of protein localization
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048316Biological Processseed development
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MNSTSDNHQY PHPTDQQGKN TSEENSNKRG KGKGGPDNNK FRYRGVRQRS WGKWVAEIRE  60
PRKRTRRWLG TFATAEDAAR AYDRAAIILY GSKAQLNLQP SGANATSSSS NSCKRGSTSS  120
SSTTQTLRPL LPRPPSASFD SSFSSSSTLL PPNVLAPANN YGFYPAVQYV DGMSQNPHQK  180
QTFGDNGYYL DTGMMLWSDS NPNPNPNPTE EDQNQQYQHQ HQQHNCLYES NVYTSVDATA  240
PVVSDPVAAV ASPDLWPSIV DDSDNYHPAD IWDYGNDPFL FDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-174398359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068903.11e-178ethylene-responsive transcription factor ABI4-like
TrEMBLM1DPJ61e-109M1DPJ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000923121e-110(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.16e-29ERF family protein