PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g026050.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 286aa    MW: 31959.7 Da    PI: 7.0305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g026050.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-184594255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GVr+++ +g+WvAeIr+p++   r+r +lg+f tae+Aa+a+++a+  l+g
  Sopen03g026050.1 45 RYRGVRQRS-WGKWVAEIREPRK---RTRRWLGTFATAEDAARAYDRAAIILYG 94
                      59****999.**********954...5999*******************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-2145102IPR016177DNA-binding domain
PfamPF008471.9E-114590IPR001471AP2/ERF domain
SMARTSM003801.7E-3645108IPR001471AP2/ERF domain
PROSITE profilePS5103222.32645102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2945102IPR001471AP2/ERF domain
CDDcd000189.16E-2145104No hitNo description
PRINTSPR003672.5E-104657IPR001471AP2/ERF domain
PRINTSPR003672.5E-106884IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MNSTSADSNY HQYPHPTNQQ GKNTSEENSN KRGKGKGGPD NNKFRYRGVR QRSWGKWVAE  60
IREPRKRTRR WLGTFATAED AARAYDRAAI ILYGSKAQLN LQPSGANATS SSSNSSKRGS  120
TSSSSTTQTL RPLLPRPPSA SFDFSFSSSS TLLPPNVLAP SNNYGFYPAV QYADDMSQNP  180
HQKQTFDDNG YHLDTGMMLW SDSNPNPNPN LTKEDQNQQY QHQHQQHNCL YESNVYTSVD  240
ATAPVVSDPV AAVASPDLWP SIVDDSDNYH PAHIWDYGND PFLFDF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1746101359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00674SELEXTransfer from GRMZM2G093595Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068902.10.0ethylene-responsive transcription factor ABI4-like
TrEMBLM1DPJ61e-110M1DPJ6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000923121e-111(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40220.13e-28ERF family protein