PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g024350.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 153aa    MW: 17384.8 Da    PI: 10.3302
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g024350.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.47.3e-1875125255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+++AeIrdp+      r++lg++ t  +Aa+a++ a+ kl+g
  Sopen03g024350.1  75 QYRGVRRRP-WGKYAAEIRDPTRK--GSRVWLGTYETDVDAARAYDCAAFKLRG 125
                       7********.**********8542..4**********99*************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-3174133IPR001471AP2/ERF domain
CDDcd000183.26E-2974133No hitNo description
PfamPF008472.2E-1275125IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-2375134IPR016177DNA-binding domain
SMARTSM003801.3E-3575139IPR001471AP2/ERF domain
PROSITE profilePS5103224.67175133IPR001471AP2/ERF domain
PRINTSPR003673.2E-137687IPR001471AP2/ERF domain
PRINTSPR003673.2E-13115135IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MINKEEEKLM LQLIREHLLG DSFIHYDPLP LFISHHKPNN FILNPTTSSV ESTPDRKFSG  60
SGNGSSPADE GTKKQYRGVR RRPWGKYAAE IRDPTRKGSR VWLGTYETDV DAARAYDCAA  120
FKLRGRKAIL NFPFDAGNLV PPVTIGRKRR IDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-2674134464ATERF1
3gcc_A3e-2674134464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069273.11e-111ethylene-responsive transcription factor ERF106-like
SwissprotQ9LY051e-39EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A1J6KBH12e-59A0A1J6KBH1_NICAT; Ethylene-responsive transcription factor erf106
TrEMBLA0A3Q7FNR72e-60A0A3Q7FNR7_SOLLC; Uncharacterized protein
STRINGSolyc03g093530.1.13e-64(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.12e-41ERF family protein
Publications ? help Back to Top
  1. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]