PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g009480.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 579aa    MW: 66592.9 Da    PI: 9.9844
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g009480.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP107.12.6e-333764913133
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksaa 95 
                       +++++ ski T++g+RdRR+Rls++ a++fFdLq+ LGfdk+skti+WL++ ++ a  elt+ s+ +             + ++++ a +++ 
  Sopen03g009480.1 376 KRERSCSKILTAQGPRDRRIRLSINMARKFFDLQELLGFDKPSKTIDWLFTHSEVALEELTNWSTHQT------------HRPKISGAINNKG 456
                       577889*********************************************************55555............2223333333333 PP

               TCP  96 kskksqksaasalnlakesrakarararertrekmrik 133
                         ++++k+a  +    ke rakarararert +km +k
  Sopen03g009480.1 457 -LERNPKRA--KEVTLKELRAKARARARERTIKKMWTK 491
                       .33333333..368899******************887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077271.8E-46187306IPR013103Reverse transcriptase, RNA-dependent DNA polymerase
PROSITE profilePS5136928.596376435IPR017887Transcription factor TCP subgroup
PfamPF036342.9E-27381444IPR005333Transcription factor, TCP
PROSITE profilePS5137010.57470487IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 579 aa     Download sequence    Send to blast
MAVNESNETA VALSHSIEID HYHPLYLHSS DTSGKSKLRF VDGKHTRETF PSSLLDLWEK  60
CNDIVLSWII NSIRKELLSS VIYVTNASKV WNDLKERLRE CWDEFDAIMP FPGCNSSNAL  120
AATSSNPIGA FVHQSRSSQY SHPSALHFTP EQYNQILQMI RPNRETSVLL YLQDLFSRRV  180
KGIGKHVQGK SLIECNWVYK IKHKANGEVE RYKARLVAKW FNQKEGLNYT ETFSPIAKMV  240
IVRSVLALAV AKKWFIYQMD VHNEFLQGDL FEEVYMTIPQ GFASHQGTDK VCRLHKSLYG  300
LKQAPSSSSI HDNPLPHYIS SSFHTSSPFL GFNGNQILLH QYYQNQFSSH YYLAKNNEDY  360
CDNSLRSFPM KKKSKKRERS CSKILTAQGP RDRRIRLSIN MARKFFDLQE LLGFDKPSKT  420
IDWLFTHSEV ALEELTNWST HQTHRPKISG AINNKGLERN PKRAKEVTLK ELRAKARARA  480
RERTIKKMWT KIETSHKSAN FFGKKDISEM EQQFFKNKLQ ANKEIIEGSG VTKIKIMPSL  540
ILGFNPNPYA PIESGTYYGG SSLSQGFQKP WDSYHSSQV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-18TCP domain protein 12