PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g002790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 345aa    MW: 36651 Da    PI: 4.988
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g002790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.76e-3688185398
               TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg....ka 90 
                       + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++ ++ti WLl+ a+pai+++tgt++ +a ++  +++ +  + n++ +    ++
  Sopen03g002790.1  88 PVKRSSKDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSEGETIRWLLERAEPAIIAATGTGTVPAIAVsVNGTLKIPTTNNEGEssrkRR 180
                       5699***********************************************************999995553112222111111111111111 PP

               TCP  91 aksaaksk 98 
                       ++     +
  Sopen03g002790.1 181 KR---AAN 185
                       11...112 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.6E-2992169IPR005333Transcription factor, TCP
PROSITE profilePS5136926.31293147IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031347Biological Processregulation of defense response
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASVENNQNM EQEDDEVNDC KIDPLLGDSH EYTIAAVGNV TDAEGVDPSP APSTDMVLLL  60
KEEPEENDLR VSTSVGMNMQ LQKVEKQPVK RSSKDRHTKV EGRGRRIRMP AACAARIFQL  120
TRELGHKSEG ETIRWLLERA EPAIIAATGT GTVPAIAVSV NGTLKIPTTN NEGESSRKRR  180
KRAANSEFYE VHEASNFAPV APIAPQGLVP VWPVGSGNGL VPTTAFTGGA TLYMLPPGTN  240
TTVAATGAQL WATPILNVPG MGYAASGVSA ASEVHLSSSC VSKSDNNGDK LTTVASAMPP  300
SSSSTGSTTT QMLRDFSLEI YDKRELQFMV GSGSSEIDQT SSSKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBMTransfer from GSVIVG01027588001Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068447.10.0transcription factor TCP19
RefseqXP_015068448.10.0transcription factor TCP19
TrEMBLG3BGW10.0G3BGW1_SOLLC; TCP transcription factor 21
STRINGSolyc03g006800.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51910.26e-61TCP family protein