PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g001520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 128aa    MW: 14664.2 Da    PI: 7.715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g001520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19557256
               AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                      +y+GVr ++ +g+++AeIrd  +++    r++lg+f +aeeAa+a+++a+ +++g+
  Sopen03g001520.1  5 KYRGVRKRP-WGKYAAEIRDtNRQG--GVRVWLGTFSSAEEAARAYDKAAYNMRGH 57
                      8********.**********33333..4**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-21565IPR016177DNA-binding domain
SMARTSM003803.2E-32570IPR001471AP2/ERF domain
PROSITE profilePS5103223.064564IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-29566IPR001471AP2/ERF domain
CDDcd000181.19E-27565No hitNo description
PfamPF008471.4E-14557IPR001471AP2/ERF domain
PRINTSPR003674.1E-11617IPR001471AP2/ERF domain
PRINTSPR003674.1E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 128 aa     Download sequence    Send to blast
MDEVKYRGVR KRPWGKYAAE IRDTNRQGGV RVWLGTFSSA EEAARAYDKA AYNMRGHLAI  60
LNFPEEYNLP RSSSHFYNNS SSMPSSSSSN VHARNDQQGK GQVLELEYLD DHVLEELLDC  120
DQHANKRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-33512814129Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068552.19e-93ethylene-responsive transcription factor ERF096-like
SwissprotQ9LTC51e-37ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A3Q7G1311e-75A0A3Q7G131_SOLLC; Uncharacterized protein
STRINGSolyc03g005500.1.12e-76(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.13e-28ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]