PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g038990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GRAS
Protein Properties Length: 678aa    MW: 75200.1 Da    PI: 5.8522
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g038990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS432.92.4e-1323136771374
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsets..eknsseelaalklfsevsPil 91 
                       lv+lLl+cAeavs++d  la+++L +l+  ++p gd+mqR+a++fteAL arla +  +  ++  p++ +  + ns e l++++++++++P++
  Sopen02g038990.1 313 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVTPIGDAMQRVASCFTEALTARLAATLATKPSTSVPKPFNpfPPNSLEILKIYQILYQACPYV 405
                       68****************************************************955444444444443301456****************** PP

              GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184
                       kf+h+taNqaI ea+e eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvgs      e+++etg+ L+++A++l+vpfef++ v +
  Sopen02g038990.1 406 KFAHFTANQAIFEAFEAEERVHVIDLDILQGYQWPAFMQALAARPGGAPFLRITGVGS----YPEAVRETGRCLTELAQSLHVPFEFHP-VGE 493
                       **********************************************************....9**************************.7** PP

              GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                       +ledl++++++ + gEalaVn+v +lhr++        ++ ++L ++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p 
  Sopen02g038990.1 494 QLEDLKPHMFNRRIGEALAVNSVNRLHRVP--GN----CIGNLLGMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPG 580
                       *****************************9..33....4446*************************************************** PP

              GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsv 370
                       +s++r+k+E+ ++g+ei+n+v+ceg er  rhe+l+kWr+ +e  GFk v+ls +a++q k ll  ++ dgy++ e++g+l+lgW+dr+++++
  Sopen02g038990.1 581 DSSQRAKLEQYIFGPEIMNIVSCEGMERMVRHERLGKWRRVMEGKGFKGVALSANAVTQSKILLGLYSCDGYKLTEDNGCLLLGWQDRAILAA 673
                       ********************************************************************************************* PP

              GRAS 371 SaWr 374
                       SaWr
  Sopen02g038990.1 674 SAWR 677
                       ***8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.335287657IPR005202Transcription factor GRAS
PfamPF035148.4E-130313677IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MGSLKNDIIK NEVGSEITSF KSQNSYSKLL PEDSLASCES KKVTPISSDF ELDCGSLIPT  60
SLTFPPKFEG GGDVEIQSPD NSIWESFFAD QLEADFMISS PVRNLSSPST FSTTTHNNNL  120
YTHHHQGIHG QSMMMCSPPR SPLRPNNYNS TNKGKGLSPL QKVFNSPNNQ FMQIESFNLP  180
ALESFLDDDL ASEYSTLKVS DVGSSSESLS VIPDFLECLA LPNSSSNMSG SFMGSLLSNT  240
SAGQVDDEIF HTVSIAPLSQ QLHQERQHEK QQKQIPTHVQ LPSTQQQYTQ IINHNLVVAA  300
PDQMQEQDSG LQLVHLLLAC AEAVSKEDYM LARRYLHHLN RVVTPIGDAM QRVASCFTEA  360
LTARLAATLA TKPSTSVPKP FNPFPPNSLE ILKIYQILYQ ACPYVKFAHF TANQAIFEAF  420
EAEERVHVID LDILQGYQWP AFMQALAARP GGAPFLRITG VGSYPEAVRE TGRCLTELAQ  480
SLHVPFEFHP VGEQLEDLKP HMFNRRIGEA LAVNSVNRLH RVPGNCIGNL LGMIRDQAPN  540
IVTIVEQEAS HNGPYFLGRF LEALHYYSAI FDSLDATFPG DSSQRAKLEQ YIFGPEIMNI  600
VSCEGMERMV RHERLGKWRR VMEGKGFKGV ALSANAVTQS KILLGLYSCD GYKLTEDNGC  660
LLLGWQDRAI LAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-973036767377Protein SCARECROW
5b3h_D7e-973036767377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063237.10.0DELLA protein RGL1-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLK4BDM90.0K4BDM9_SOLLC; Uncharacterized protein
STRINGSolyc02g094340.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.11e-98RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]