PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g034520.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 240aa    MW: 27324.8 Da    PI: 10.3089
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g034520.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.27e-39621822132
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaaksa 94 
                       ++kkdrh ki T++g RdRRvRls+ +a++fFdLqd+LG+dk+skt++WL++++k ai +l ++ s++++ +     s +++n+++++++ ++
  Sopen02g034520.1  62 PVKKDRHTKILTSQGHRDRRVRLSIGVARKFFDLQDMLGYDKPSKTLDWLFTKSKLAIEDLINDVSKKSTPS-----SINNNNNNNNSECDED 149
                       68**************************************************************55555222.....2333333444556666 PP

               TCP  95 akskksqksaasalnlakesrakarararertrekmri 132
                       +    ++k ++      ++srakarararert +k  +
  Sopen02g034520.1 150 MIVPLAKKAKQ-----ERDSRAKARARARERTIKKIWT 182
                       54444444444.....679*************998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-3563147IPR005333Transcription factor, TCP
PROSITE profilePS5136933.32764122IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.497162179IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MFPFGNSSNG NPILHSSFLN NQILLHQHDL PTHHHYLAAA NGHLIDSYAT NNVVINNKRK  60
KPVKKDRHTK ILTSQGHRDR RVRLSIGVAR KFFDLQDMLG YDKPSKTLDW LFTKSKLAIE  120
DLINDVSKKS TPSSINNNNN NNNSECDEDM IVPLAKKAKQ ERDSRAKARA RARERTIKKI  180
WTQIAPNREA TASHYNNSTR NWNHDDVNPT IMSSMDASTI CCTSLPIVQK AWDSYHGSQI
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065569.11e-180transcription factor CYCLOIDEA-like
TrEMBLG3BGU71e-152G3BGU7_SOLLC; TCP transcription factor 7
STRINGSolyc02g089830.1.11e-153(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43332244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.25e-30TCP family protein