PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g033790.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 283aa    MW: 31854.2 Da    PI: 7.1978
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g033790.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP100.23.7e-3145179298
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssss 69 
                        g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak +i+el+ +                         +   
  Sopen02g033790.1  45 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKNEIDELPPLqippgslnpnlypmlgnshqittnkE--- 134
                       689*************************************************************44444333333333322222221110... PP

               TCP  70 aseceaesssssasnsssg..................................kaaksaaksk 98 
                                         g                                  ++++++ +++
  Sopen02g033790.1 135 ------------------GrinwdnnipleppnnnalgynpnffkwdpsnlslAHSENSLSHQ 179
                       ..................122344444455555556666666666666444332222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036347.0E-2847117IPR005333Transcription factor, TCP
PROSITE profilePS5136931.35347105IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MITREDKGNV VNDDGNKSKA CTTSNSTTSW TRLKDPRIVR VSRAFGGKDR HSKVCTVRGL  60
RDRRVRLSVP TAIQLYDLQD RLGLNQPSKV VDWLLDAAKN EIDELPPLQI PPGSLNPNLY  120
PMLGNSHQIT TNKEGRINWD NNIPLEPPNN NALGYNPNFF KWDPSNLSLA HSENSLSHQH  180
DHHQNFNLMS SMPLTSHHQP VVYPPGLPQF FHQHNNINVG ASSSSEFDPK EINFQMLSNN  240
SGSENPMSTS TNSFRHSIDS TNQSIRPFHF LPSQNCDDTE PSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1952106155Putative transcription factor PCF6
5zkt_B3e-1952106155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064545.10.0transcription factor TCP17 isoform X1
TrEMBLG3BGU50.0G3BGU5_SOLLC; TCP transcription factor 5
STRINGSolyc02g089020.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.18e-48plastid transcription factor 1