PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g030280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 351aa    MW: 37822.5 Da    PI: 5.4646
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g030280.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_178.39.3e-25253315163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+++v++L+ eN++Lk+el++l++e++kl+se+
  Sopen02g030280.1 253 ERELKRQKRKQSNRESARRSRLRKQAECEELQRRVEALSHENHSLKDELQRLSEECEKLTSEN 315
                       89***********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077779.8E-30192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1702.3E-21247312No hitNo description
SMARTSM003386.1E-23253317IPR004827Basic-leucine zipper domain
PfamPF001702.7E-22253315IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.369255318IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.56E-12256312No hitNo description
CDDcd147025.95E-24258308No hitNo description
PROSITE patternPS000360260275IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGAGEESTPT KTSKPPLTQE TPTAPSYPDW SSSMQAYYSA GATPPFFASP VASPAPHPYM  60
WGGQHPLMPP YGTPVPYPAL YPPAGVYAHP NIATPAPNSV PANPEADGKG PEGKDRNSSK  120
KLKVCSGGKA GDNGKVTSGS GNDGATQSDE SRSEGTSDTN DENDNNEFAA NKKGSFDQML  180
ADGASAQNNP AKENHPTSIH GNPVTMPATN LNIGMDVWNA SAAGPGAIKI QQNATGPVIG  240
HEGRMNDQWI QEERELKRQK RKQSNRESAR RSRLRKQAEC EELQRRVEAL SHENHSLKDE  300
LQRLSEECEK LTSENNLIKE ELTLLCGPDV VSKLERNDNV ARIQSNVEEA S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1269275RRSRLRK
2269276RRSRLRKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX749420.0X74942.1 L.esculentum GBF4 mRNA for G-box binding protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063525.10.0PREDICTED: G-box-binding factor 1
SwissprotP427741e-108GBF1_ARATH; G-box-binding factor 1
TrEMBLM1AYD70.0M1AYD7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000329600.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37802446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.21e-84G-box binding factor 1