PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g022170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 284aa    MW: 32203.1 Da    PI: 4.4644
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g022170.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP32.43.2e-10961563689
               TCP  36 qdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg......k 89 
                       q +LG d++sk+i+WL+++ak+ai++l + +++ +s   ++++ + s ++++s+      +
  Sopen02g022170.1  96 QTQLGDDRPSKAIDWLIKEAKAAIDALGEFPNNFHSTKlNPKKMQYSFDQEQSPefsqenR 156
                       789************************9994444433345555555555444443332221 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.7E-796152IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MNHQFQVSDE EDGSEEEEEE EEEGFQENDI GNLQSHYQNQ QMPQSLCKKP EKWANFIVSE  60
QELNKGTRRM KPQRAKTDVI EGHGGRIIRA TGKERQTQLG DDRPSKAIDW LIKEAKAAID  120
ALGEFPNNFH STKLNPKKMQ YSFDQEQSPE FSQENRGVPN SECGVQDNQQ EIPFLSDLQS  180
YPHGHFLNFQ SLQDDTILSS GNQHQGSFFT TTSVNHFPPV LSQNQVFSHR EPLQSSFFPL  240
MSDPLSTQLE TLSYGFSNDG FSGIISSASR IQGEEEQATF FTAS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015069120.11e-178transcription factor TCP10-like
TrEMBLK4B8V21e-175K4B8V2_SOLLC; Uncharacterized protein
STRINGSolyc02g077250.2.11e-175(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41122145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.33e-09TCP family protein