PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g016460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ZF-HD
Protein Properties Length: 356aa    MW: 39177.2 Da    PI: 7.9496
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g016460.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer109.12.4e-3467124359
       ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                        v Y+eClkNhAaslGghavDGCgEf+ps+ ++ +++++lkCaACgCHRnFHRre+ee
  Sopen02g016460.1  67 VVIYRECLKNHAASLGGHAVDGCGEFLPSPAANpSDPTSLKCAACGCHRNFHRREPEE 124
                       589******************************9*********************976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047709.0E-2968122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2370120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.08470121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-3070121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.2E-29200274IPR009057Homeodomain-like
SuperFamilySSF466899.76E-19200273IPR009057Homeodomain-like
TIGRFAMsTIGR015653.4E-26212269IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MELTNNNNNN TTISTITTTT TVKTPEAEIE TPTQIQKLKP FAFSNGVLKR KSSFNHNNHH  60
LHHHPVVVIY RECLKNHAAS LGGHAVDGCG EFLPSPAANP SDPTSLKCAA CGCHRNFHRR  120
EPEEPVVIPP PPIATAVLEY QPHHRHHPPH PPPPLQVPCG EHSSPNSPSP PPISSAYYPA  180
SAPHMLLALS AGFSGEKNQN PTSAPLGHSN GRKRFRTKFT PDQKVKMQEF AERVGWKMQK  240
RDEDLVSNFC NEIGVEKGVL KVWMHNNKNT FGKKSDQPNS GSGDGDNDNH HQNGNTNSDN  300
GFCIVSRNNN HNNSDSEFHH HLQHESNNNN DNKKGIIHHL HTTDSVVATN GSSSSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-202132701875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015067108.10.0zinc-finger homeodomain protein 9-like
SwissprotQ9LHF01e-68ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A3Q7F0T00.0A0A3Q7F0T0_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000343681e-166(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10882485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.12e-62homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]