PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g016040.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 229aa    MW: 25870.1 Da    PI: 9.3328
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g016040.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP102.28.8e-3243165289
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............................. 65 
                        g+kdrhsk+ T +g+RdRRvRls+++a +++dLqd+LG+d++sk ++WLl++ak+ i+el+ +                             
  Sopen02g016040.1  43 FGGKDRHSKVLTVKGLRDRRVRLSVPTALQVYDLQDKLGLDQPSKVVDWLLNEAKHDIDELPPLqirdqtglpltglrkeeegtmvvsdedrv 135
                       689*************************************************************77777777777776666665555444333 PP

               TCP  66 .............ssssaseceaesssssasnsssg.............k 89 
                                    +            s        +             k
  Sopen02g016040.1 136 kldarnldlkgnsN------------S--------NsnnnnnsfrfglyK 165
                       22222222211110............1........011111112232220 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.9945103IPR017887Transcription factor TCP subgroup
PfamPF036342.0E-3045156IPR005333Transcription factor, TCP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MISREVDPSD NNVTMIPKKS SLSSSSSWRR FKDPRIVRVS RAFGGKDRHS KVLTVKGLRD  60
RRVRLSVPTA LQVYDLQDKL GLDQPSKVVD WLLNEAKHDI DELPPLQIRD QTGLPLTGLR  120
KEEEGTMVVS DEDRVKLDAR NLDLKGNSNS NSNNNNNSFR FGLYKDNHSS QSVHTDSHHG  180
VAVPHEQQEI QNLNVMAALP STIYNMPLSS QILVYPPAGL PQYFFHPHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1850104155Putative transcription factor PCF6
5zkt_B4e-1850104155Putative transcription factor PCF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015065471.11e-168transcription factor TCP13-like
TrEMBLM1CIV81e-116M1CIV8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000683321e-117(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8212499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.19e-42plastid transcription factor 1