PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g015800.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TCP
Protein Properties Length: 318aa    MW: 35626.6 Da    PI: 5.613
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g015800.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP73.75.7e-23113024105
               TCP  24 lsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............................ 88 
                       ++a+caa +F+L++eLG+ +d++tieWLl++a+pai+++tgt++ +a+++++ s++   s+s+ +                            
  Sopen02g015800.2   1 MPALCAAHVFQLTKELGHRTDGETIEWLLRNAEPAIIAATGTCTLPATQVTTTSENIPLSQSQPSvlapltratpvsgfpvgggffsmtpqsq 93 
                       9*****************************************999997774444443333222224566666667777777777777777777 PP

               TCP  89 ...................kaaksaa.kskksqksaa 105
                                          ++++++a   ++ ++++ 
  Sopen02g015800.2  94 pncrldlcqpslefsgnayRHMPFTAlLLQPVTADDG 130
                       7777777777777777777666666533333333333 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136919.506139IPR017887Transcription factor TCP subgroup
PfamPF036343.3E-181130IPR005333Transcription factor, TCP
SuperFamilySSF544959.18E-18206277IPR016135Ubiquitin-conjugating enzyme/RWD-like
Gene3DG3DSA:3.10.110.101.5E-15208277IPR016135Ubiquitin-conjugating enzyme/RWD-like
PfamPF001791.0E-12214276IPR000608Ubiquitin-conjugating enzyme E2
PROSITE profilePS5012711.487221318IPR000608Ubiquitin-conjugating enzyme E2
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MPALCAAHVF QLTKELGHRT DGETIEWLLR NAEPAIIAAT GTCTLPATQV TTTSENIPLS  60
QSQPSVLAPL TRATPVSGFP VGGGFFSMTP QSQPNCRLDL CQPSLEFSGN AYRHMPFTAL  120
LLQPVTADDG EEKVAEEDEK QPPTARMRKS TEADRVREAH RKVMVTNHRD EGHNYYLASK  180
RESGRNFLVK LTICSYYNQG FSYSEDISEL NLPETCSISF PNGKDDLMNF EVTIRPDEGY  240
YVGGTFVFSF IISSIYPPEA PKVKCKTKVY HPNIDLTHIA MGYFALKLNF LAQFEIDIFK  300
VFLNYCLDLL LMFSFTFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2nvu_C3e-2320427632103NEDD8-conjugating enzyme Ubc12
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24824201
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.12e-28TCP family protein