PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g013990.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 331aa    MW: 35667.3 Da    PI: 5.7316
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g013990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_175.28.5e-24232294163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ kv++L++eN+ Lk+el + ++e++kl+se+
  Sopen02g013990.1 232 ERELKRQKRKQSNRESARRSRLRKQAECEELQHKVETLSNENHGLKEELRKVSEECEKLTSEN 294
                       89***********************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077773.8E-31192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1703.9E-19227291No hitNo description
PfamPF001701.1E-21232294IPR004827Basic-leucine zipper domain
SMARTSM003381.3E-22232296IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.955234297IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.67E-12235291No hitNo description
CDDcd147026.51E-24237287No hitNo description
PROSITE patternPS000360239254IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MGAGEESTPA KPSKVTSTQE TQATPSYPDW SSMQAYYGAG ATPPFFPSTV ASPTPHPYMW  60
GGQHPLMPPY GAPVPYPALY PPAGVYAHPN MPMTPNTLQA NPESDSKAPD GKDQNTSKKL  120
KGCSGGKAGE SGKAASGSGN DGGATRSAES GSEGSSDEND ENDNHEFSAD KNRSFDLMLA  180
NGNPVAMPAP NLNIGMDLWN APSGGPGMIK MRSNQSGVSP APGMGREWIQ DERELKRQKR  240
KQSNRESARR SRLRKQAECE ELQHKVETLS NENHGLKEEL RKVSEECEKL TSENNSIKDE  300
LTRLYGPEAV SKLESNANAM RLQSNVEEAK S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248254RRSRLRK
2248255RRSRLRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0138730.0BT013873.1 Lycopersicon esculentum clone 132853R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015066328.10.0PREDICTED: G-box-binding factor 1-like isoform X2
SwissprotP427741e-105GBF1_ARATH; G-box-binding factor 1
TrEMBLK4B6I30.0K4B6I3_SOLLC; Uncharacterized protein
STRINGSolyc02g062950.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-73G-box binding factor 1