PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g009530.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family AP2
Protein Properties Length: 425aa    MW: 47472.8 Da    PI: 8.363
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g009530.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.13.8e-1771130155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n+   k+ k+++lg ++ +e Aa+a++ a++k++g
  Sopen02g009530.1  71 SIYRGVTRHRWTGRYEAHLWDkSTWNQnqnKKgKQVYLGAYDDEEAAARAYDLAALKYWG 130
                       57*******************766644468557*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-1771139IPR016177DNA-binding domain
PfamPF008476.4E-1371130IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-1572139IPR001471AP2/ERF domain
PROSITE profilePS5103220.12672138IPR001471AP2/ERF domain
SMARTSM003801.9E-2572144IPR001471AP2/ERF domain
PRINTSPR003674.2E-57384IPR001471AP2/ERF domain
PRINTSPR003674.2E-5120140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MASLSSEPTA KTEGSSGNDA GGGETSEAMG HIGTDQLLLY RGLKKAKKER GYTAKERISK  60
MPPCTAGKRS SIYRGVTRHR WTGRYEAHLW DKSTWNQNQN KKGKQVYLGA YDDEEAAARA  120
YDLAALKYWG PGTLINFPVT DYTRDLEEMQ NVSREDYLAS LRRKSGGFSR GISKYRPLSS  180
RWDLQFGRVP GADYFNSLHY GDNATVDNEY IGGFCMDRKI DLSSYIKWWG GNKARQTDSH  240
LKISEETKVG CPEDIDNELR ASELSIQQTE PYEMPRLGVY QENKNHKSST LSAVSILSQS  300
AAYKSLVEKV AKKKEKVEND ENENKSTINR VDRGKMIEKS SPDSGSERLG AAFLNAGGLS  360
INRNLHPLTP LLSAPLLTNY NSIDPLTDPV LWTSIVPNFN TGSSRTAEVH KSEASSDYTL  420
FQQED
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015063572.10.0AP2-like ethylene-responsive transcription factor At2g41710
SwissprotQ8GWK21e-157AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710
TrEMBLA0A3Q7FH510.0A0A3Q7FH51_SOLLC; Uncharacterized protein
STRINGXP_009783849.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA107341921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.11e-134AP2 family protein