PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g054420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family FAR1
Protein Properties Length: 781aa    MW: 89524 Da    PI: 6.1949
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g054420.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR199.63.2e-3174165291
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                       fYn+YA++vGFs+r+s+s++s+++g i++r fvC keg+r+ ++k+  +++ +r+r++tr+gCka l vk +++g w+v+++++eHnHel+p
  Sopen01g054420.1  74 FYNSYARRVGFSTRVSSSRRSRKDGAIIQRSFVCAKEGFRNLNEKRtkDREIKRPRTVTRVGCKAALSVKIQDSGMWVVSNFVKEHNHELVP 165
                       9***************************************998888545677889***********************************86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2974165IPR004330FAR1 DNA binding domain
PfamPF105515.4E-32286378IPR018289MULE transposase domain
PfamPF044345.4E-12554600IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096611.263566602IPR007527Zinc finger, SWIM-type
SMARTSM005751.2E-9577604IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 781 aa     Download sequence    Send to blast
MDNEVIEFDI GLGGGGGSED GDGDDVLDEG NVANCSLVID GNVATVRSYS PQGDLDLEPY  60
EGMEFESEEA AKAFYNSYAR RVGFSTRVSS SRRSRKDGAI IQRSFVCAKE GFRNLNEKRT  120
KDREIKRPRT VTRVGCKAAL SVKIQDSGMW VVSNFVKEHN HELVPPDQVH CLRSHRQISG  180
PAKTLIDTLQ AAGMGPRRIM SALIKEYGGI SKVGFTEVDC RNYMRNNRQR SMEGDIQLLL  240
DYLKQMNIQN AGFFYAVQGD EDQCTGNVFW ADSKARANYN YFGDTVTFDT TYRSNRYRLP  300
FAPFTGVNHH GQPVLFGCAF LINESEASFI WLFKTWLAAM SGQPPLSMTT DHDAVIRSAI  360
MQVFPETRHR FCKWHIFKKC QEKLSHVFLE HPNFEADFHK CVNLTETTEE FESCWLSLVD  420
KYELRDHDWL QVIYLDRTQW VQVYLRDAFF AEMSITQRSD SMNSYFDGYV NASTNLNQFF  480
KLYEKAVESR TEKEVKADYD TMSTFPVLKT PSPMEKQASE VYTKKLFMRF QEELVATLTF  540
MANKVEDDGL VTTYQVAKFG DDHSAYYVRF NVLEMKATCS CQMFEFSGLL CRHVLAVFRV  600
TNVLTLPSHY ILKRWSRSAK SSVALEDRVA DVINYYLESH TVRYNMLRHE AFKFVEEGAE  660
TVDSYTVAMA ALEEASKKIF LAVKHDGRIS IVNGHCRENL TRNGVHANYN SEDEQRSLAC  720
PLSEDDMDTK IQELSYQLDC ATQKCEVYRA NLYSVLKDID DHKQQLSINV QRIKHSLKDD  780
L
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015062914.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
SwissprotQ9SZL80.0FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A3Q7EV480.0A0A3Q7EV48_SOLLC; Uncharacterized protein
STRINGSolyc01g112320.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43522109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.10.0FAR1-related sequence 5
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]