PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g051880.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 88aa    MW: 10226.5 Da    PI: 9.6303
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g051880.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.32e-091054344
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      +WT++  +l+ +a +q+ ++   +W  +ar +g g+++ ++k ++
  Sopen01g051880.1 10 SWTPQQNKLFERALAQFDKDtpdRWQNVARAVGGGKSADEVKRHY 54
                      7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.0E-4456IPR009057Homeodomain-like
PROSITE profilePS512939.822662IPR017884SANT domain
SMARTSM007173.1E-7760IPR001005SANT/Myb domain
SuperFamilySSF466891.87E-12966IPR009057Homeodomain-like
PfamPF002496.0E-71054IPR001005SANT/Myb domain
CDDcd001671.20E-41154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MASSSLQSSS WTPQQNKLFE RALAQFDKDT PDRWQNVARA VGGGKSADEV KRHYEILIED  60
LRRIESGRVP LPTYTHEQQR LLKYMNLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-28174173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-131HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068699.16e-61protein RADIALIS-like 4
SwissprotQ1A1731e-31RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A3Q7FDR55e-52A0A3Q7FDR5_SOLLC; Uncharacterized protein
TrEMBLM0ZJC25e-52M0ZJC2_SOLTU; Uncharacterized protein
STRINGSolyc01g109690.1.18e-53(Solanum lycopersicum)
STRINGPGSC0003DMT4000019248e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.14e-32RAD-like 6