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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g051860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 9940.98 Da PI: 8.9918 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.7e-10 | 13 | 61 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 WT++ + + +a + + ++ +W+ +ar +g ++t++++k ++q +l Sopen01g051860.1 13 TWTAQQNKAFERALAVYDKDtpdRWSNVARAVGGNKTAEDVKQHYQLLL 61 7*********************************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 5.2E-9 | 10 | 63 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.12E-7 | 13 | 61 | No hit | No description |
SuperFamily | SSF46689 | 1.2E-12 | 13 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.0E-7 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.7E-4 | 14 | 61 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.435 | 14 | 61 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MSSSQVGQGS SVTWTAQQNK AFERALAVYD KDTPDRWSNV ARAVGGNKTA EDVKQHYQLL 60 LHDIMFIESG GVPFPNYTTP TGGRPRDNNK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-33 | 8 | 90 | 5 | 85 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 1e-151 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015061756.1 | 5e-63 | transcription factor RADIALIS | ||||
Swissprot | Q58FS3 | 4e-33 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A3Q7ETE6 | 1e-56 | A0A3Q7ETE6_SOLLC; Uncharacterized protein | ||||
STRING | PGSC0003DMT400001883 | 3e-45 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA202 | 24 | 231 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 4e-31 | RAD-like 1 |
Publications ? help Back to Top | |||
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