PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g050460.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ERF
Protein Properties Length: 280aa    MW: 30854.8 Da    PI: 4.9394
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g050460.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.31.2e-20148197255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+W+AeIrdp+    + +r++lg+f taeeAa+a+++a+ +++g
  Sopen01g050460.1 148 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFTTAEEAARAYDKAAIEFRG 197
                       59*******.**********94....36************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.88E-35147204No hitNo description
SuperFamilySSF541712.81E-22148205IPR016177DNA-binding domain
PfamPF008474.9E-14148197IPR001471AP2/ERF domain
SMARTSM003802.6E-37148211IPR001471AP2/ERF domain
PROSITE profilePS5103224.948148205IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-32148205IPR001471AP2/ERF domain
PRINTSPR003676.1E-12149160IPR001471AP2/ERF domain
PRINTSPR003676.1E-12171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTSNSLQNNN QFQQQQPRIT GDEEYSVMVA TLKNVINGNI PTQNYQEFNV FSPYNYSTAT  60
TTTTTTVTSS SSPSTSMSTS FEQVLGVSAE QEPCQFCRIQ GCLGCDIFGT TFSSSSSAPA  120
PVAAPVADNK KKSSSTTTVA IAKKKKKNYR GVRQRPWGKW AAEIRDPRKA ARVWLGTFTT  180
AEEAARAYDK AAIEFRGPRA KLNFSFADYT VDTQEQQSTL SSSPQQLPEE PQQSQTANNN  240
SDFGNEIWDQ LMGDNEIQDW LTMMNFNGDS SDSGGNVHSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-24147204159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129146KKKSSSTTTVAIAKKKKK
2141147AKKKKKN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015085937.10.0ethylene-responsive transcription factor ERF109
TrEMBLM1CFE51e-157M1CFE5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000663431e-158(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.19e-25redox responsive transcription factor 1